Literature DB >> 33576021

Protein folding and surface interaction phase diagrams in vitro and in cells.

Martin Gruebele1.   

Abstract

Protein stability is subject to environmental perturbations such as pressure and crowding, as well as sticking to other macromolecules and quinary structure. Thus, the environment inside and outside the cell plays a key role in how proteins fold, interact, and function on the scale from a few molecules to macroscopic ensembles. This review discusses three aspects of protein phase diagrams: first, the relevance of phase diagrams to protein folding and function in vitro and in cells; next, how the evolution of protein surfaces impacts on interaction phase diagrams; and finally, how phase separation plays a role on much larger length-scales than individual proteins or oligomers, when liquid phase-separated regions form to assist protein function and cell homeostasis.
© 2021 Federation of European Biochemical Societies.

Entities:  

Keywords:  zzm321990E. colizzm321990; liquid-liquid phase-separated regions; mammalian cell; protein folding; quinary structure

Mesh:

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Year:  2021        PMID: 33576021      PMCID: PMC8164991          DOI: 10.1002/1873-3468.14058

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  63 in total

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Journal:  Chemistry       Date:  2019-08-22       Impact factor: 5.236

Review 2.  Spliceosome structure and function.

Authors:  Cindy L Will; Reinhard Lührmann
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3.  Inducing high activity of a thermophilic enzyme at ambient temperatures by directed evolution.

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Journal:  Chem Commun (Camb)       Date:  2017-08-22       Impact factor: 6.222

4.  The Effect of Fluorescent Protein Tags on Phosphoglycerate Kinase Stability Is Nonadditive.

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Journal:  J Phys Chem B       Date:  2016-03-14       Impact factor: 2.991

5.  Macromolecular Crowding: How Shape and Interactions Affect Diffusion.

Authors:  Tomasz Skóra; Farzaneh Vaghefikia; Jörg Fitter; Svyatoslav Kondrat
Journal:  J Phys Chem B       Date:  2020-08-24       Impact factor: 2.991

6.  An analytical theory to describe sequence-specific inter-residue distance profiles for polyampholytes and intrinsically disordered proteins.

Authors:  Jonathan Huihui; Kingshuk Ghosh
Journal:  J Chem Phys       Date:  2020-04-30       Impact factor: 3.488

7.  Brownian dynamics simulations of aldolase binding glyceraldehyde 3-phosphate dehydrogenase and the possibility of substrate channeling.

Authors:  I V Ouporov; H R Knull; A Huber; K A Thomasson
Journal:  Biophys J       Date:  2001-06       Impact factor: 4.033

8.  Biomolecular interactions modulate macromolecular structure and dynamics in atomistic model of a bacterial cytoplasm.

Authors:  Isseki Yu; Takaharu Mori; Tadashi Ando; Ryuhei Harada; Jaewoon Jung; Yuji Sugita; Michael Feig
Journal:  Elife       Date:  2016-11-01       Impact factor: 8.140

Review 9.  Fast protein folding kinetics.

Authors:  Hannah Gelman; Martin Gruebele
Journal:  Q Rev Biophys       Date:  2014-03-18       Impact factor: 5.318

10.  Phase separation of YAP reorganizes genome topology for long-term YAP target gene expression.

Authors:  Danfeng Cai; Daniel Feliciano; Peng Dong; Eduardo Flores; Martin Gruebele; Natalie Porat-Shliom; Shahar Sukenik; Zhe Liu; Jennifer Lippincott-Schwartz
Journal:  Nat Cell Biol       Date:  2019-12-02       Impact factor: 28.824

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  1 in total

Review 1.  Mass spectrometry-based technologies for probing the 3D world of plant proteins.

Authors:  Matthew R Blackburn; Benjamin B Minkoff; Michael R Sussman
Journal:  Plant Physiol       Date:  2022-05-03       Impact factor: 8.005

  1 in total

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