Literature DB >> 33566859

Efficient neural spike sorting using data subdivision and unification.

Masood Ul Hassan1,2, Rakesh Veerabhadrappa2, Asim Bhatti2.   

Abstract

Neural spike sorting is prerequisite to deciphering useful information from electrophysiological data recorded from the brain, in vitro and/or in vivo. Significant advancements in nanotechnology and nanofabrication has enabled neuroscientists and engineers to capture the electrophysiological activities of the brain at very high resolution, data rate and fidelity. However, the evolution in spike sorting algorithms to deal with the aforementioned technological advancement and capability to quantify higher density data sets is somewhat limited. Both supervised and unsupervised clustering algorithms do perform well when the data to quantify is small, however, their efficiency degrades with the increase in the data size in terms of processing time and quality of spike clusters being formed. This makes neural spike sorting an inefficient process to deal with large and dense electrophysiological data recorded from brain. The presented work aims to address this challenge by providing a novel data pre-processing framework, which can enhance the efficiency of the conventional spike sorting algorithms significantly. The proposed framework is validated by applying on ten widely used algorithms and six large feature sets. Feature sets are calculated by employing PCA and Haar wavelet features on three widely adopted large electrophysiological datasets for consistency during the clustering process. A MATLAB software of the proposed mechanism is also developed and provided to assist the researchers, active in this domain.

Entities:  

Year:  2021        PMID: 33566859      PMCID: PMC7875432          DOI: 10.1371/journal.pone.0245589

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  40 in total

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Journal:  J Neurosci Methods       Date:  2011-10-21       Impact factor: 2.390

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4.  Monitoring spike train synchrony.

Authors:  Thomas Kreuz; Daniel Chicharro; Conor Houghton; Ralph G Andrzejak; Florian Mormann
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5.  Spike detection from noisy neural data in linear-probe recordings.

Authors:  Takashi Takekawa; Keisuke Ota; Masanori Murayama; Tomoki Fukai
Journal:  Eur J Neurosci       Date:  2014-05-15       Impact factor: 3.386

Review 6.  Towards reliable spike-train recordings from thousands of neurons with multielectrodes.

Authors:  Gaute T Einevoll; Felix Franke; Espen Hagen; Christophe Pouzat; Kenneth D Harris
Journal:  Curr Opin Neurobiol       Date:  2011-10-22       Impact factor: 6.627

7.  Unified selective sorting approach to analyse multi-electrode extracellular data.

Authors:  R Veerabhadrappa; C P Lim; T T Nguyen; M Berk; S J Tye; P Monaghan; S Nahavandi; A Bhatti
Journal:  Sci Rep       Date:  2016-06-24       Impact factor: 4.379

Review 8.  Brain-machine interfaces: computational demands and clinical needs meet basic neuroscience.

Authors:  Ferdinando A Mussa-Ivaldi; Lee E Miller
Journal:  Trends Neurosci       Date:  2003-06       Impact factor: 13.837

9.  Integrated device for optical stimulation and spatiotemporal electrical recording of neural activity in light-sensitized brain tissue.

Authors:  Jiayi Zhang; Farah Laiwalla; Jennifer A Kim; Hayato Urabe; Rick Van Wagenen; Yoon-Kyu Song; Barry W Connors; Feng Zhang; Karl Deisseroth; Arto V Nurmikko
Journal:  J Neural Eng       Date:  2009-09-01       Impact factor: 5.379

10.  Zika virus-induced hyper excitation precedes death of mouse primary neuron.

Authors:  Julie Gaburro; Asim Bhatti; Vinod Sundaramoorthy; Megan Dearnley; Diane Green; Saeid Nahavandi; Prasad N Paradkar; Jean-Bernard Duchemin
Journal:  Virol J       Date:  2018-04-27       Impact factor: 4.099

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  1 in total

Review 1.  From End to End: Gaining, Sorting, and Employing High-Density Neural Single Unit Recordings.

Authors:  Réka Barbara Bod; János Rokai; Domokos Meszéna; Richárd Fiáth; István Ulbert; Gergely Márton
Journal:  Front Neuroinform       Date:  2022-06-13       Impact factor: 3.739

  1 in total

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