Literature DB >> 24827558

Spike detection from noisy neural data in linear-probe recordings.

Takashi Takekawa1, Keisuke Ota, Masanori Murayama, Tomoki Fukai.   

Abstract

Simultaneous recordings of multiple neuron activities with multi-channel extracellular electrodes are widely used for studying information processing by the brain's neural circuits. In this method, the recorded signals containing the spike events of a number of adjacent or distant neurons must be correctly sorted into spike trains of individual neurons, and a variety of methods have been proposed for this spike sorting. However, spike sorting is computationally difficult because the recorded signals are often contaminated by biological noise. Here, we propose a novel method for spike detection, which is the first stage of spike sorting and hence crucially determines overall sorting performance. Our method utilizes a model of extracellular recording data that takes into account variations in spike waveforms, such as the widths and amplitudes of spikes, by detecting the peaks of band-pass-filtered data. We show that the new method significantly improves the cost-performance of multi-channel electrode recordings by increasing the number of cleanly sorted neurons.
© 2014 Federation of European Neuroscience Societies and John Wiley & Sons Ltd.

Keywords:  diversified spike waveforms; error rate estimation; mouse; multi-electrode; peak distribution

Mesh:

Year:  2014        PMID: 24827558     DOI: 10.1111/ejn.12614

Source DB:  PubMed          Journal:  Eur J Neurosci        ISSN: 0953-816X            Impact factor:   3.386


  4 in total

1.  Efficient neural spike sorting using data subdivision and unification.

Authors:  Masood Ul Hassan; Rakesh Veerabhadrappa; Asim Bhatti
Journal:  PLoS One       Date:  2021-02-10       Impact factor: 3.240

2.  Different Activity Patterns in Retinal Ganglion Cells of TRPM1 and mGluR6 Knockout Mice.

Authors:  Haruki Takeuchi; Sho Horie; Satoru Moritoh; Hiroki Matsushima; Tesshu Hori; Yoshitaka Kimori; Katsunori Kitano; Yasuhiro Tsubo; Masao Tachibana; Chieko Koike
Journal:  Biomed Res Int       Date:  2018-05-08       Impact factor: 3.411

3.  Compatibility Evaluation of Clustering Algorithms for Contemporary Extracellular Neural Spike Sorting.

Authors:  Rakesh Veerabhadrappa; Masood Ul Hassan; James Zhang; Asim Bhatti
Journal:  Front Syst Neurosci       Date:  2020-06-30

4.  Cluster tendency assessment in neuronal spike data.

Authors:  Sara Mahallati; James C Bezdek; Milos R Popovic; Taufik A Valiante
Journal:  PLoS One       Date:  2019-11-12       Impact factor: 3.240

  4 in total

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