Literature DB >> 33559747

Diversity of limestone bacteriophages infecting Dickeya solani isolated in the Czech Republic.

Karel Petrzik1, Josef Vacek2, Sára Brázdová3, Rudolf Ševčík4, Igor Koloniuk3.   

Abstract

Seven novel tailed lytic viruses (Ds3CZ, Ds5CZ, Ds9CZ, Ds16CZ, Ds20CZ, Ds23CZ, Ds25CZ) infecting the bacterium Dickeya solani were isolated in the Czech Republic. Genomes of these viruses are dsDNA, 149,364 to 155,285 bp in length, and the genome arrangement is very similar to that of the type virus Dickeya virus LIMEstone 1. All but the Ds25CZ virus should be regarded as strains of a single species. Most of the sequence differences are due to the presence or absence of homing endonuclease (HE) genes, with 23 HEs found in Ds3CZ, Ds5CZ, and Ds20CZ, 22 in Ds9CZ, 19 in Ds16CZ, 18 in Ds25CZ, and 15 in Ds23CZ.

Entities:  

Year:  2021        PMID： 33559747     DOI： 10.1007/s00705-020-04926-7

Source DB:  PubMed          Journal:  Arch Virol        ISSN： 0304-8608            Impact factor:   2.574


  9 in total

Review 1.  Homing endonucleases: from microbial genetic invaders to reagents for targeted DNA modification.

Authors:  Barry L Stoddard
Journal:  Structure       Date:  2011-01-12       Impact factor: 5.006

2.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

Authors:  Sudhir Kumar; Glen Stecher; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2016-03-22       Impact factor: 16.240

3.  T4-related bacteriophage LIMEstone isolates for the control of soft rot on potato caused by 'Dickeya solani'.

Authors:  Evelien M Adriaenssens; Johan Van Vaerenbergh; Dieter Vandenheuvel; Vincent Dunon; Pieter-Jan Ceyssens; Maurice De Proft; Andrew M Kropinski; Jean-Paul Noben; Martine Maes; Rob Lavigne
Journal:  PLoS One       Date:  2012-03-07       Impact factor: 3.240

Review 4.  Structural, functional and evolutionary relationships between homing endonucleases and proteins from their host organisms.

Authors:  Gregory K Taylor; Barry L Stoddard
Journal:  Nucleic Acids Res       Date:  2012-03-09       Impact factor: 16.971

5.  Genomic, proteomic and morphological characterization of two novel broad host lytic bacteriophages ΦPD10.3 and ΦPD23.1 infecting pectinolytic Pectobacterium spp. and Dickeya spp.

Authors:  Robert Czajkowski; Zofia Ozymko; Victor de Jager; Joanna Siwinska; Anna Smolarska; Adam Ossowicki; Magdalena Narajczyk; Ewa Lojkowska
Journal:  PLoS One       Date:  2015-03-24       Impact factor: 3.240

Review 6.  Mobile DNA elements in T4 and related phages.

Authors:  David R Edgell; Ewan A Gibb; Marlene Belfort
Journal:  Virol J       Date:  2010-10-28       Impact factor: 4.099

7.  The complete genome, structural proteome, comparative genomics and phylogenetic analysis of a broad host lytic bacteriophage ϕD3 infecting pectinolytic Dickeya spp.

Authors:  Robert Czajkowski; Zofia Ozymko; Joanna Siwinska; Adam Ossowicki; Victor de Jager; Magdalena Narajczyk; Ewa Łojkowska
Journal:  Stand Genomic Sci       Date:  2015-09-24

8.  Complete genome sequence of a broad-host-range lytic Dickeya spp. bacteriophage ϕD5.

Authors:  Robert Czajkowski; Zofia Ozymko; Szymon Zwirowski; Ewa Lojkowska
Journal:  Arch Virol       Date:  2014-07-08       Impact factor: 2.574

9.  Host Specificity of the Dickeya Bacteriophage PP35 Is Directed by a Tail Spike Interaction With Bacterial O-Antigen, Enabling the Infection of Alternative Non-pathogenic Bacterial Host.

Authors:  Anastasia P Kabanova; Mikhail M Shneider; Aleksei A Korzhenkov; Eugenia N Bugaeva; Kirill K Miroshnikov; Evelina L Zdorovenko; Eugene E Kulikov; Stepan V Toschakov; Alexander N Ignatov; Yuriy A Knirel; Konstantin A Miroshnikov
Journal:  Front Microbiol       Date:  2019-01-11       Impact factor: 5.640
  9 in total
  3 in total

1.  Complete genome sequences of novel Berlinvirus and novel Certrevirus lytic for Pectobacterium sp. causing soft rot and black leg disease of potato.

Authors:  Karel Petrzik; Martin Kmoch; Sára Brázdová; Rudolf Ševčík
Journal:  Virus Genes       Date:  2021-04-29       Impact factor: 2.332

2.  Resistance of Dickeya solani strain IPO 2222 to lytic bacteriophage ΦD5 results in fitness tradeoffs for the bacterium during infection.

Authors:  Przemyslaw Bartnik; Kinga Lewtak; Marta Fiołka; Paulina Czaplewska; Magdalena Narajczyk; Robert Czajkowski
Journal:  Sci Rep       Date:  2022-06-24       Impact factor: 4.996

3.  Novel findings in context of molecular diversity and abundance of bacteriophages in wastewater environments of Riyadh, Saudi Arabia.

Authors:  Fahad Alanazi; Islam Nour; Atif Hanif; Ibrahim Al-Ashkar; Reem M Aljowaie; Saleh Eifan
Journal:  PLoS One       Date:  2022-08-18       Impact factor: 3.752
  3 in total

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