Literature DB >> 33914264

Complete genome sequences of novel Berlinvirus and novel Certrevirus lytic for Pectobacterium sp. causing soft rot and black leg disease of potato.

Karel Petrzik1, Martin Kmoch2, Sára Brázdová3, Rudolf Ševčík4.   

Abstract

Two novel dsDNA bacteriophages named Pectobacterium virus CB251 (PcCB251) and Pectobacterium virus CB7V (PcCB7V) targeting plant pathogen Pectobacterium parmentieri have been isolated and sequenced. The PcCB251 genome consists of 40,557 bp with G+C content of 48.6% and contains 47 predicted genes on a single strand. The phage is classified in genus Berlinvirus, family Autographiviridae. The PcCB7V phage has a circular dsDNA genome of 146,054 bp with G+C content of 50.4% and contains 269 predicted protein genes on both strands and 13 tRNA genes. The PcCB7V phage can be classified in genus Certrevirus, subfamily Vequintavirinae. Both novel bacteriophages have narrow host ranges, but they extend the list of candidates for phage-based control of pectolytic bacteria causing soft rot disease of potato.

Entities:  

Keywords:  Berlinvirus; Certrevirus; Complete sequence; Novel virus; Soft rot of potato

Year:  2021        PMID: 33914264     DOI: 10.1007/s11262-021-01838-9

Source DB:  PubMed          Journal:  Virus Genes        ISSN: 0920-8569            Impact factor:   2.332


  10 in total

1.  Isolation, genome sequencing and functional analysis of two T7-like coliphages of avian pathogenic Escherichia coli.

Authors:  Mianmian Chen; Juntian Xu; Huochun Yao; Chengping Lu; Wei Zhang
Journal:  Gene       Date:  2016-01-29       Impact factor: 3.688

2.  Gepard: a rapid and sensitive tool for creating dotplots on genome scale.

Authors:  Jan Krumsiek; Roland Arnold; Thomas Rattei
Journal:  Bioinformatics       Date:  2007-02-19       Impact factor: 6.937

3.  Diversity of limestone bacteriophages infecting Dickeya solani isolated in the Czech Republic.

Authors:  Karel Petrzik; Josef Vacek; Sára Brázdová; Rudolf Ševčík; Igor Koloniuk
Journal:  Arch Virol       Date:  2021-02-09       Impact factor: 2.574

4.  A Newly Isolated Bacteriophage, PBES 02, Infecting Cronobacter sakazakii.

Authors:  Hyung Ju Lee; Wan Il Kim; Young Chan Kwon; Kyung Eun Cha; Minjin Kim; Heejoon Myung
Journal:  J Microbiol Biotechnol       Date:  2016-09-28       Impact factor: 2.351

5.  A novel six-phage cocktail reduces Pectobacterium atrosepticum soft rot infection in potato tubers under simulated storage conditions.

Authors:  Alexander Byth Carstens; Amaru Miranda Djurhuus; Witold Kot; Lars Hestbjerg Hansen
Journal:  FEMS Microbiol Lett       Date:  2019-05-01       Impact factor: 2.742

6.  Bacteriophages Isolated in China for the Control of Pectobacterium carotovorum Causing Potato Soft Rot in Kenya.

Authors:  Peter Muturi; Junping Yu; Alice Nyambura Maina; Samuel Kariuki; Francis B Mwaura; Hongping Wei
Journal:  Virol Sin       Date:  2019-03-13       Impact factor: 4.327

7.  Transfer of the potato plant isolates of Pectobacterium wasabiae to Pectobacterium parmentieri sp. nov.

Authors:  Slimane Khayi; Jérémy Cigna; Teik Min Chong; Angélique Quêtu-Laurent; Kok-Gan Chan; Valérie Hélias; Denis Faure
Journal:  Int J Syst Evol Microbiol       Date:  2016-09-26       Impact factor: 2.747

8.  Biocontrol of Pectobacterium carotovorum subsp. carotovorum using bacteriophage PP1.

Authors:  Jeong-A Lim; Samnyu Jee; Dong Hwan Lee; Eunjung Roh; Kyusuk Jung; Changsik Oh; Sunggi Heu
Journal:  J Microbiol Biotechnol       Date:  2013-08       Impact factor: 2.351

9.  T4-related bacteriophage LIMEstone isolates for the control of soft rot on potato caused by 'Dickeya solani'.

Authors:  Evelien M Adriaenssens; Johan Van Vaerenbergh; Dieter Vandenheuvel; Vincent Dunon; Pieter-Jan Ceyssens; Maurice De Proft; Andrew M Kropinski; Jean-Paul Noben; Martine Maes; Rob Lavigne
Journal:  PLoS One       Date:  2012-03-07       Impact factor: 3.240

10.  RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.

Authors:  Thomas Brettin; James J Davis; Terry Disz; Robert A Edwards; Svetlana Gerdes; Gary J Olsen; Robert Olson; Ross Overbeek; Bruce Parrello; Gordon D Pusch; Maulik Shukla; James A Thomason; Rick Stevens; Veronika Vonstein; Alice R Wattam; Fangfang Xia
Journal:  Sci Rep       Date:  2015-02-10       Impact factor: 4.379

  10 in total
  1 in total

1.  Characterization of Three Novel Virulent Aeromonas Phages Provides Insights into the Diversity of the Autographiviridae Family.

Authors:  Katarzyna Bujak; Przemyslaw Decewicz; Michal Kitowicz; Monika Radlinska
Journal:  Viruses       Date:  2022-05-10       Impact factor: 5.818

  1 in total

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