Literature DB >> 21220111

Homing endonucleases: from microbial genetic invaders to reagents for targeted DNA modification.

Barry L Stoddard1.   

Abstract

Homing endonucleases are microbial DNA-cleaving enzymes that mobilize their own reading frames by generating double strand breaks at specific genomic invasion sites. These proteins display an economy of size, and yet recognize long DNA sequences (typically 20 to 30 base pairs). They exhibit a wide range of fidelity at individual nucleotide positions in a manner that is strongly influenced by host constraints on the coding sequence of the targeted gene. The activity of these proteins leads to site-specific recombination events that can result in the insertion, deletion, mutation, or correction of DNA sequences. Over the past fifteen years, the crystal structures of representatives from several homing endonuclease families have been solved, and methods have been described to create variants of these enzymes that cleave novel DNA targets. Engineered homing endonucleases proteins are now being used to generate targeted genomic modifications for a variety of biotech and medical applications. Copyright Â
© 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21220111      PMCID: PMC3038549          DOI: 10.1016/j.str.2010.12.003

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  95 in total

1.  Mutations altering the cleavage specificity of a homing endonuclease.

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Journal:  Nucleic Acids Res       Date:  2002-09-01       Impact factor: 16.971

2.  Connections between RNA splicing and DNA intron mobility in yeast mitochondria: RNA maturase and DNA endonuclease switching experiments.

Authors:  V Goguel; A Delahodde; C Jacq
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3.  Intron-encoded homing endonuclease I-TevI also functions as a transcriptional autorepressor.

Authors:  David R Edgell; Victoria Derbyshire; Patrick Van Roey; Stephen LaBonne; Matthew J Stanger; Zhong Li; Thomas M Boyd; David A Shub; Marlene Belfort
Journal:  Nat Struct Mol Biol       Date:  2004-09-07       Impact factor: 15.369

Review 4.  Homing endonuclease structure and function.

Authors:  Barry L Stoddard
Journal:  Q Rev Biophys       Date:  2005-12-09       Impact factor: 5.318

5.  Genes within genes: multiple LAGLIDADG homing endonucleases target the ribosomal protein S3 gene encoded within an rnl group I intron of Ophiostoma and related taxa.

Authors:  J Sethuraman; A Majer; N C Friedrich; D R Edgell; G Hausner
Journal:  Mol Biol Evol       Date:  2009-07-13       Impact factor: 16.240

6.  Statistical modeling and analysis of the LAGLIDADG family of site-specific endonucleases and identification of an intein that encodes a site-specific endonuclease of the HNH family.

Authors:  J Z Dalgaard; A J Klar; M J Moser; W R Holley; A Chatterjee; I S Mian
Journal:  Nucleic Acids Res       Date:  1997-11-15       Impact factor: 16.971

7.  Mitochondrial genetics. VII. Allelism and mapping studies of ribosomal mutants resistant to chloramphenicol, erythromycin and spiramycin in S. cerevisiae.

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Journal:  Genetics       Date:  1974-12       Impact factor: 4.562

8.  Social networking between mobile introns and their host genes.

Authors:  Barry Stoddard; Marlene Belfort
Journal:  Mol Microbiol       Date:  2010-10       Impact factor: 3.501

9.  Phylogenomic analysis of the GIY-YIG nuclease superfamily.

Authors:  Stanislaw Dunin-Horkawicz; Marcin Feder; Janusz M Bujnicki
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10.  Maturase and endonuclease functions depend on separate conserved domains of the bifunctional protein encoded by the group I intron aI4 alpha of yeast mitochondrial DNA.

Authors:  R M Henke; R A Butow; P S Perlman
Journal:  EMBO J       Date:  1995-10-16       Impact factor: 11.598

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  109 in total

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2.  5'-Cytosine-phosphoguanine (CpG) methylation impacts the activity of natural and engineered meganucleases.

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Review 5.  Cheating evolution: engineering gene drives to manipulate the fate of wild populations.

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6.  Monomeric site-specific nucleases for genome editing.

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Review 7.  Genome editing and the next generation of antiviral therapy.

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Review 8.  Selfish genetic elements, genetic conflict, and evolutionary innovation.

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Review 9.  New breeding technique "genome editing" for crop improvement: applications, potentials and challenges.

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10.  Lytic KFS-SE2 phage as a novel bio-receptor for Salmonella Enteritidis detection.

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