Literature DB >> 33558715

Structure- and mechanism-guided design of single fluorescent protein-based biosensors.

Yusuke Nasu1, Yi Shen2, Luke Kramer1, Robert E Campbell3,4.   

Abstract

Intensiometric genetically encoded biosensors, based on allosteric modulation of the fluorescence of a single fluorescent protein, are powerful tools for enabling imaging of neural activities and other cellular biochemical events. The archetypical example of such biosensors is the GCaMP series of Ca2+ biosensors, which have been steadily improved over the past two decades and are now indispensable tools for neuroscience. However, no other biosensors have reached levels of performance, or had revolutionary impacts within specific disciplines, comparable to that of the Ca2+ biosensors. Of the many reasons why this has been the case, a critical one has been a general black-box view of biosensor structure and mechanism. With this Perspective, we aim to summarize what is known about biosensor structure and mechanisms and, based on this foundation, provide guidelines to accelerate the development of a broader range of biosensors with performance comparable to that of the GCaMP series.

Entities:  

Mesh:

Substances:

Year:  2021        PMID: 33558715     DOI: 10.1038/s41589-020-00718-x

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  89 in total

1.  Circular permutation and receptor insertion within green fluorescent proteins.

Authors:  G S Baird; D A Zacharias; R Y Tsien
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

2.  Fluorescent indicators for Ca2+ based on green fluorescent proteins and calmodulin.

Authors:  A Miyawaki; J Llopis; R Heim; J M McCaffery; J A Adams; M Ikura; R Y Tsien
Journal:  Nature       Date:  1997-08-28       Impact factor: 49.962

3.  Genetically encoded FRET-based biosensors for multiparameter fluorescence imaging.

Authors:  Haley J Carlson; Robert E Campbell
Journal:  Curr Opin Biotechnol       Date:  2009-02-14       Impact factor: 9.740

Review 4.  Structural and evolutionary approaches to the design and optimization of fluorescence-based small molecule biosensors.

Authors:  Joe A Kaczmarski; Joshua A Mitchell; Matthew A Spence; Vanessa Vongsouthi; Colin J Jackson
Journal:  Curr Opin Struct Biol       Date:  2019-02-27       Impact factor: 6.809

Review 5.  Nanomaterials for In Vivo Imaging.

Authors:  Bryan Ronain Smith; Sanjiv Sam Gambhir
Journal:  Chem Rev       Date:  2017-01-03       Impact factor: 60.622

Review 6.  Genetically Encoded Fluorescent Biosensors Illuminate the Spatiotemporal Regulation of Signaling Networks.

Authors:  Eric C Greenwald; Sohum Mehta; Jin Zhang
Journal:  Chem Rev       Date:  2018-12-14       Impact factor: 60.622

7.  An expanded palette of genetically encoded Ca²⁺ indicators.

Authors:  Yongxin Zhao; Satoko Araki; Jiahui Wu; Takayuki Teramoto; Yu-Fen Chang; Masahiro Nakano; Ahmed S Abdelfattah; Manabi Fujiwara; Takeshi Ishihara; Takeharu Nagai; Robert E Campbell
Journal:  Science       Date:  2011-09-08       Impact factor: 47.728

Review 8.  Teaching Old Dyes New Tricks: Biological Probes Built from Fluoresceins and Rhodamines.

Authors:  Luke D Lavis
Journal:  Annu Rev Biochem       Date:  2017-04-07       Impact factor: 23.643

9.  KCC2-dependent Steady-state Intracellular Chloride Concentration and pH in Cortical Layer 2/3 Neurons of Anesthetized and Awake Mice.

Authors:  Juan C Boffi; Johannes Knabbe; Michaela Kaiser; Thomas Kuner
Journal:  Front Cell Neurosci       Date:  2018-01-25       Impact factor: 5.505

10.  Single-fluorophore biosensors for sensitive and multiplexed detection of signalling activities.

Authors:  Sohum Mehta; Yong Zhang; Richard H Roth; Jin-Fan Zhang; Albert Mo; Brian Tenner; Richard L Huganir; Jin Zhang
Journal:  Nat Cell Biol       Date:  2018-09-24       Impact factor: 28.824

View more
  24 in total

Review 1.  Protein transfection via spherical nucleic acids.

Authors:  Sasha B Ebrahimi; Devleena Samanta; Caroline D Kusmierz; Chad A Mirkin
Journal:  Nat Protoc       Date:  2022-01-17       Impact factor: 13.491

2.  Ratiometric Imaging of Mitochondrial Hydrogen Peroxide in Aβ42-Mediated Neurotoxicity.

Authors:  Xinyu Li; Yiyu Zhang; Hui-Wang Ai
Journal:  ACS Sens       Date:  2022-02-28       Impact factor: 7.711

3.  Sustained deep-tissue voltage recording using a fast indicator evolved for two-photon microscopy.

Authors:  Zhuohe Liu; Xiaoyu Lu; Vincent Villette; Yueyang Gou; Kevin L Colbert; Shujuan Lai; Sihui Guan; Michelle A Land; Jihwan Lee; Tensae Assefa; Daniel R Zollinger; Maria M Korympidou; Anna L Vlasits; Michelle M Pang; Sharon Su; Changjia Cai; Emmanouil Froudarakis; Na Zhou; Saumil S Patel; Cameron L Smith; Annick Ayon; Pierre Bizouard; Jonathan Bradley; Katrin Franke; Thomas R Clandinin; Andrea Giovannucci; Andreas S Tolias; Jacob Reimer; Stéphane Dieudonné; François St-Pierre
Journal:  Cell       Date:  2022-08-18       Impact factor: 66.850

4.  A genetically encoded far-red fluorescent calcium ion biosensor derived from a biliverdin-binding protein.

Authors:  Rina Hashizume; Hajime Fujii; Sohum Mehta; Keisuke Ota; Yong Qian; Wenchao Zhu; Mikhail Drobizhev; Yusuke Nasu; Jin Zhang; Haruhiko Bito; Robert E Campbell
Journal:  Protein Sci       Date:  2022-10       Impact factor: 6.993

5.  AlphaFold2 and RoseTTAFold predict posttranslational modifications. Chromophore formation in GFP-like proteins.

Authors:  Sophia M Hartley; Kelly A Tiernan; Gjina Ahmetaj; Adriana Cretu; Yan Zhuang; Marc Zimmer
Journal:  PLoS One       Date:  2022-06-16       Impact factor: 3.752

6.  Spatial regulation of AMPK signaling revealed by a sensitive kinase activity reporter.

Authors:  Danielle L Schmitt; Stephanie D Curtis; Anne C Lyons; Jin-Fan Zhang; Mingyuan Chen; Catherine Y He; Sohum Mehta; Reuben J Shaw; Jin Zhang
Journal:  Nat Commun       Date:  2022-07-05       Impact factor: 17.694

Review 7.  Fluorescent Indicators For Biological Imaging of Monatomic Ions.

Authors:  Sheng-Yi Wu; Yi Shen; Irene Shkolnikov; Robert E Campbell
Journal:  Front Cell Dev Biol       Date:  2022-04-27

8.  Neurophotonic tools for microscopic measurements and manipulation: status report.

Authors:  Ahmed S Abdelfattah; Sapna Ahuja; Taner Akkin; Srinivasa Rao Allu; Joshua Brake; David A Boas; Erin M Buckley; Robert E Campbell; Anderson I Chen; Xiaojun Cheng; Tomáš Čižmár; Irene Costantini; Massimo De Vittorio; Anna Devor; Patrick R Doran; Mirna El Khatib; Valentina Emiliani; Natalie Fomin-Thunemann; Yeshaiahu Fainman; Tomas Fernandez-Alfonso; Christopher G L Ferri; Ariel Gilad; Xue Han; Andrew Harris; Elizabeth M C Hillman; Ute Hochgeschwender; Matthew G Holt; Na Ji; Kıvılcım Kılıç; Evelyn M R Lake; Lei Li; Tianqi Li; Philipp Mächler; Evan W Miller; Rickson C Mesquita; K M Naga Srinivas Nadella; U Valentin Nägerl; Yusuke Nasu; Axel Nimmerjahn; Petra Ondráčková; Francesco S Pavone; Citlali Perez Campos; Darcy S Peterka; Filippo Pisano; Ferruccio Pisanello; Francesca Puppo; Bernardo L Sabatini; Sanaz Sadegh; Sava Sakadzic; Shy Shoham; Sanaya N Shroff; R Angus Silver; Ruth R Sims; Spencer L Smith; Vivek J Srinivasan; Martin Thunemann; Lei Tian; Lin Tian; Thomas Troxler; Antoine Valera; Alipasha Vaziri; Sergei A Vinogradov; Flavia Vitale; Lihong V Wang; Hana Uhlířová; Chris Xu; Changhuei Yang; Mu-Han Yang; Gary Yellen; Ofer Yizhar; Yongxin Zhao
Journal:  Neurophotonics       Date:  2022-04-27       Impact factor: 4.212

Review 9.  The design and evolution of fluorescent protein-based sensors for monoatomic ions in biology.

Authors:  Kiheon Baek; Ke Ji; Weicheng Peng; Sureshee M Liyanaarachchi; Sheel C Dodani
Journal:  Protein Eng Des Sel       Date:  2021-02-15       Impact factor: 1.952

10.  Mechanical and chemical activation of GPR68 probed with a genetically encoded fluorescent reporter.

Authors:  Alper D Ozkan; Tina Gettas; Audrey Sogata; Wynn Phaychanpheng; Miou Zhou; Jérôme J Lacroix
Journal:  J Cell Sci       Date:  2021-08-17       Impact factor: 5.235

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.