Literature DB >> 34581820

The design and evolution of fluorescent protein-based sensors for monoatomic ions in biology.

Kiheon Baek1, Ke Ji1, Weicheng Peng1, Sureshee M Liyanaarachchi1, Sheel C Dodani1.   

Abstract

Living cells rely on a finely tuned symphony of inorganic ion gradients composed of both cations and anions. This delicate balance is maintained by biological receptors all acting in concert to selectively recognize and position ions for homeostasis. These dynamic processes can be intercepted and visualized with optical microscopy at the organismal, tissue, cellular and subcellular levels using fluorescent protein-based biosensors. Since the first report of such tool for calcium (Ca2+) in 1997, outstanding biological questions and innovations in protein engineering along with associated fields have driven the development of new biosensors for Ca2+ and beyond. In this Review, we summarize a workflow that can be used to generate fluorescent protein-based biosensors to study monoatomic ions in biology. To showcase the scope of this approach, we highlight recent advances reported for Ca2+ biosensors and in detail discuss representative case studies of biosensors reported in the last four years for potassium (K+), magnesium (Mg2+), copper (Cu2+/+), lanthanide (Ln3+) and chloride (Cl-) ions.
© The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  fluorescence imaging; genetically encoded fluorescent biosensor; ions; protein engineering

Mesh:

Substances:

Year:  2021        PMID: 34581820      PMCID: PMC8477612          DOI: 10.1093/protein/gzab023

Source DB:  PubMed          Journal:  Protein Eng Des Sel        ISSN: 1741-0126            Impact factor:   1.952


  68 in total

1.  Neural circuits. Labeling of active neural circuits in vivo with designed calcium integrators.

Authors:  Benjamin F Fosque; Yi Sun; Hod Dana; Chao-Tsung Yang; Tomoko Ohyama; Michael R Tadross; Ronak Patel; Marta Zlatic; Douglas S Kim; Misha B Ahrens; Vivek Jayaraman; Loren L Looger; Eric R Schreiter
Journal:  Science       Date:  2015-02-13       Impact factor: 47.728

2.  A Selective, Protein-Based Fluorescent Sensor with Picomolar Affinity for Rare Earth Elements.

Authors:  Joseph A Mattocks; Jackson V Ho; Joseph A Cotruvo
Journal:  J Am Chem Soc       Date:  2019-02-11       Impact factor: 15.419

3.  Structure and Cooperativity of the Cytosolic Domain of the CorA Mg2+ Channel from Escherichia coli.

Authors:  Michael Lerche; Hena Sandhu; Lukas Flöckner; Martin Högbom; Mikaela Rapp
Journal:  Structure       Date:  2017-06-29       Impact factor: 5.006

4.  High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.

Authors:  Hod Dana; Yi Sun; Boaz Mohar; Brad K Hulse; Aaron M Kerlin; Jeremy P Hasseman; Getahun Tsegaye; Arthur Tsang; Allan Wong; Ronak Patel; John J Macklin; Yang Chen; Arthur Konnerth; Vivek Jayaraman; Loren L Looger; Eric R Schreiter; Karel Svoboda; Douglas S Kim
Journal:  Nat Methods       Date:  2019-06-17       Impact factor: 28.547

5.  Bright and High-Performance Genetically Encoded Ca2+ Indicator Based on mNeonGreen Fluorescent Protein.

Authors:  Landon Zarowny; Abhi Aggarwal; Virginia M S Rutten; Ilya Kolb; Ronak Patel; Hsin-Yi Huang; Yu-Fen Chang; Tiffany Phan; Richard Kanyo; Misha B Ahrens; W Ted Allison; Kaspar Podgorski; Robert E Campbell
Journal:  ACS Sens       Date:  2020-07-08       Impact factor: 7.711

Review 6.  Directed evolution in mammalian cells.

Authors:  Samuel J Hendel; Matthew D Shoulders
Journal:  Nat Methods       Date:  2021-04-07       Impact factor: 28.547

Review 7.  Physiology and Pathophysiology of Potassium Homeostasis: Core Curriculum 2019.

Authors:  Biff F Palmer; Deborah J Clegg
Journal:  Am J Kidney Dis       Date:  2019-06-19       Impact factor: 11.072

8.  Magnesium basics.

Authors:  Wilhelm Jahnen-Dechent; Markus Ketteler
Journal:  Clin Kidney J       Date:  2012-02

9.  Novel genetically encoded fluorescent probes enable real-time detection of potassium in vitro and in vivo.

Authors:  Helmut Bischof; Markus Rehberg; Sarah Stryeck; Katharina Artinger; Emrah Eroglu; Markus Waldeck-Weiermair; Benjamin Gottschalk; Rene Rost; Andras T Deak; Tobias Niedrist; Nemanja Vujic; Hanna Lindermuth; Ruth Prassl; Brigitte Pelzmann; Klaus Groschner; Dagmar Kratky; Kathrin Eller; Alexander R Rosenkranz; Tobias Madl; Nikolaus Plesnila; Wolfgang F Graier; Roland Malli
Journal:  Nat Commun       Date:  2017-11-10       Impact factor: 14.919

10.  Multiplexed Optical Sensors in Arrayed Islands of Cells for multimodal recordings of cellular physiology.

Authors:  Christopher A Werley; Stefano Boccardo; Alessandra Rigamonti; Emil M Hansson; Adam E Cohen
Journal:  Nat Commun       Date:  2020-08-04       Impact factor: 14.919

View more
  1 in total

1.  Coupling a Live Cell Directed Evolution Assay with Coevolutionary Landscapes to Engineer an Improved Fluorescent Rhodopsin Chloride Sensor.

Authors:  Hsichuan Chi; Qin Zhou; Jasmine N Tutol; Shelby M Phelps; Jessica Lee; Paarth Kapadia; Faruck Morcos; Sheel C Dodani
Journal:  ACS Synth Biol       Date:  2022-04-07       Impact factor: 5.249

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.