Literature DB >> 21903779

An expanded palette of genetically encoded Ca²⁺ indicators.

Yongxin Zhao1, Satoko Araki, Jiahui Wu, Takayuki Teramoto, Yu-Fen Chang, Masahiro Nakano, Ahmed S Abdelfattah, Manabi Fujiwara, Takeshi Ishihara, Takeharu Nagai, Robert E Campbell.   

Abstract

Engineered fluorescent protein (FP) chimeras that modulate their fluorescence in response to changes in calcium ion (Ca(2+)) concentration are powerful tools for visualizing intracellular signaling activity. However, despite a decade of availability, the palette of single FP-based Ca(2+) indicators has remained limited to a single green hue. We have expanded this palette by developing blue, improved green, and red intensiometric indicators, as well as an emission ratiometric indicator with an 11,000% ratio change. This series enables improved single-color Ca(2+) imaging in neurons and transgenic Caenorhabditis elegans. In HeLa cells, Ca(2+) was imaged in three subcellular compartments, and, in conjunction with a cyan FP-yellow FP-based indicator, Ca(2+) and adenosine 5'-triphosphate were simultaneously imaged. This palette of indicators paints the way to a colorful new era of Ca(2+) imaging.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21903779      PMCID: PMC3560286          DOI: 10.1126/science.1208592

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  14 in total

1.  Quantitative export of a reporter protein, GFP, by the twin-arginine translocation pathway in Escherichia coli.

Authors:  Claire M L Barrett; Nicola Ray; Joanne D Thomas; Colin Robinson; Albert Bolhuis
Journal:  Biochem Biophys Res Commun       Date:  2003-05-02       Impact factor: 3.575

2.  Fluorescent indicators for Ca2+ based on green fluorescent proteins and calmodulin.

Authors:  A Miyawaki; J Llopis; R Heim; J M McCaffery; J A Adams; M Ikura; R Y Tsien
Journal:  Nature       Date:  1997-08-28       Impact factor: 49.962

3.  In vitro 'sexual' evolution through the PCR-based staggered extension process (StEP).

Authors:  Huimin Zhao; Wenjuan Zha
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

4.  Circularly permuted green fluorescent proteins engineered to sense Ca2+.

Authors:  T Nagai; A Sawano; E S Park; A Miyawaki
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-06       Impact factor: 11.205

5.  Ca²⁺ regulation of mitochondrial ATP synthesis visualized at the single cell level.

Authors:  Masahiro Nakano; Hiromi Imamura; Takeharu Nagai; Hiroyuki Noji
Journal:  ACS Chem Biol       Date:  2011-04-28       Impact factor: 5.100

6.  A high signal-to-noise Ca(2+) probe composed of a single green fluorescent protein.

Authors:  J Nakai; M Ohkura; K Imoto
Journal:  Nat Biotechnol       Date:  2001-02       Impact factor: 54.908

7.  Imaging cellular signals in the heart in vivo: Cardiac expression of the high-signal Ca2+ indicator GCaMP2.

Authors:  Yvonne N Tallini; Masamichi Ohkura; Bum-Rak Choi; Guangju Ji; Keiji Imoto; Robert Doran; Jane Lee; Patricia Plan; Jason Wilson; Hong-Bo Xin; Atsushi Sanbe; James Gulick; John Mathai; Jeffrey Robbins; Guy Salama; Junichi Nakai; Michael I Kotlikoff
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-13       Impact factor: 11.205

8.  Structural basis for calcium sensing by GCaMP2.

Authors:  Qi Wang; Bo Shui; Michael I Kotlikoff; Holger Sondermann
Journal:  Structure       Date:  2008-12-10       Impact factor: 5.006

9.  Visualization of ATP levels inside single living cells with fluorescence resonance energy transfer-based genetically encoded indicators.

Authors:  Hiromi Imamura; Kim P Huynh Nhat; Hiroko Togawa; Kenta Saito; Ryota Iino; Yasuyuki Kato-Yamada; Takeharu Nagai; Hiroyuki Noji
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-31       Impact factor: 11.205

10.  Crystal structures of the GCaMP calcium sensor reveal the mechanism of fluorescence signal change and aid rational design.

Authors:  Jasper Akerboom; Jonathan D Vélez Rivera; María M Rodríguez Guilbe; Elisa C Alfaro Malavé; Hector H Hernandez; Lin Tian; S Andrew Hires; Jonathan S Marvin; Loren L Looger; Eric R Schreiter
Journal:  J Biol Chem       Date:  2008-12-18       Impact factor: 5.157

View more
  502 in total

1.  The Lego-logic of optogenetics.

Authors:  Thomas G Oertner
Journal:  Nat Methods       Date:  2011-11-29       Impact factor: 28.547

2.  A fluorogenic red fluorescent protein heterodimer.

Authors:  Spencer C Alford; Ahmed S Abdelfattah; Yidan Ding; Robert E Campbell
Journal:  Chem Biol       Date:  2012-03-23

3.  Correlating calcium binding, Förster resonance energy transfer, and conformational change in the biosensor TN-XXL.

Authors:  Anselm Geiger; Luigi Russo; Thomas Gensch; Thomas Thestrup; Stefan Becker; Karl-Peter Hopfner; Christian Griesinger; Gregor Witte; Oliver Griesbeck
Journal:  Biophys J       Date:  2012-05-15       Impact factor: 4.033

4.  Genetically targetable and color-switching fluorescent probe.

Authors:  Dmytro A Yushchenko; Ming Zhang; Qi Yan; Alan S Waggoner; Marcel P Bruchez
Journal:  Chembiochem       Date:  2012-07-06       Impact factor: 3.164

5.  Optogenetic control of endogenous Ca(2+) channels in vivo.

Authors:  Taeyoon Kyung; Sangkyu Lee; Jung Eun Kim; Taesup Cho; Hyerim Park; Yun-Mi Jeong; Dongkyu Kim; Anna Shin; Sungsoo Kim; Jinhee Baek; Jihoon Kim; Na Yeon Kim; Doyeon Woo; Sujin Chae; Cheol-Hee Kim; Hee-Sup Shin; Yong-Mahn Han; Daesoo Kim; Won Do Heo
Journal:  Nat Biotechnol       Date:  2015-09-14       Impact factor: 54.908

6.  The calcium-binding protein ALG-2 regulates protein secretion and trafficking via interactions with MISSL and MAP1B proteins.

Authors:  Terunao Takahara; Kuniko Inoue; Yumika Arai; Keiko Kuwata; Hideki Shibata; Masatoshi Maki
Journal:  J Biol Chem       Date:  2017-09-01       Impact factor: 5.157

Review 7.  Mitochondrial Ca2+ concentrations in live cells: quantification methods and discrepancies.

Authors:  Celia Fernandez-Sanz; Sergio De la Fuente; Shey-Shing Sheu
Journal:  FEBS Lett       Date:  2019-05-18       Impact factor: 4.124

8.  Longitudinal in vivo two-photon fluorescence imaging.

Authors:  Sarah E Crowe; Graham C R Ellis-Davies
Journal:  J Comp Neurol       Date:  2014-06-01       Impact factor: 3.215

9.  Dual optical recordings for action potentials and calcium handling in induced pluripotent stem cell models of cardiac arrhythmias using genetically encoded fluorescent indicators.

Authors:  LouJin Song; Daniel W Awari; Elizabeth Y Han; Eugenia Uche-Anya; Seon-Hye E Park; Yoko A Yabe; Wendy K Chung; Masayuki Yazawa
Journal:  Stem Cells Transl Med       Date:  2015-03-13       Impact factor: 6.940

Review 10.  Genetically encoded indicators of neuronal activity.

Authors:  Michael Z Lin; Mark J Schnitzer
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.