Literature DB >> 35196453

Visualizing Conformational Ensembles of the Nucleosome by NMR.

Catherine A Musselman1, Tatiana G Kutateladze2.   

Abstract

The formation of chromatin not only compacts the eukaryotic genome into the nucleus but also provides a mechanism for the regulation of all DNA templated processes. Spatial and temporal modulation of the chromatin structure is critical in such regulation and involves fine-tuned functioning of the basic subunit of chromatin, the nucleosome. It has become apparent that the nucleosome is an inherently dynamic system, but characterization of these dynamics at the atomic level has remained challenging. NMR spectroscopy is a powerful tool for investigating the conformational ensemble and dynamics of proteins and protein complexes, and recent advances have made the study of large systems possible. Here, we review recent studies which utilize NMR spectroscopy to uncover the atomic level conformation and dynamics of the nucleosome and provide a better understanding of the importance of these dynamics in key regulatory events.

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Year:  2022        PMID: 35196453      PMCID: PMC9089449          DOI: 10.1021/acschembio.1c00954

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   4.634


  49 in total

1.  Structures and interactions of the core histone tail domains.

Authors:  Chunyang Zheng; Jeffrey J Hayes
Journal:  Biopolymers       Date:  2003-04       Impact factor: 2.505

2.  Nucleosome repositioning via loop formation.

Authors:  I M Kulić; H Schiessel
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

3.  Structural insights into the histone H1-nucleosome complex.

Authors:  Bing-Rui Zhou; Hanqiao Feng; Hidenori Kato; Liang Dai; Yuedong Yang; Yaoqi Zhou; Yawen Bai
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-11       Impact factor: 11.205

4.  Structure and Dynamics in the Nucleosome Revealed by Solid-State NMR.

Authors:  Xiangyan Shi; Chinmayi Prasanna; Toshio Nagashima; Toshio Yamazaki; Konstantin Pervushin; Lars Nordenskiöld
Journal:  Angew Chem Int Ed Engl       Date:  2018-07-06       Impact factor: 15.336

Review 5.  Recent advances in single molecule studies of nucleosomes.

Authors:  Jessica L Killian; Ming Li; Maxim Y Sheinin; Michelle D Wang
Journal:  Curr Opin Struct Biol       Date:  2011-12-13       Impact factor: 6.809

6.  Nucleosome accessibility governed by the dimer/tetramer interface.

Authors:  Vera Böhm; Aaron R Hieb; Andrew J Andrews; Alexander Gansen; Andrea Rocker; Katalin Tóth; Karolin Luger; Jörg Langowski
Journal:  Nucleic Acids Res       Date:  2010-12-21       Impact factor: 16.971

7.  Accessibility of the histone H3 tail in the nucleosome for binding of paired readers.

Authors:  Jovylyn Gatchalian; Xiaodong Wang; Jinzen Ikebe; Khan L Cox; Adam H Tencer; Yi Zhang; Nathaniel L Burge; Luo Di; Matthew D Gibson; Catherine A Musselman; Michael G Poirier; Hidetoshi Kono; Jeffrey J Hayes; Tatiana G Kutateladze
Journal:  Nat Commun       Date:  2017-11-14       Impact factor: 14.919

8.  Site-Specific Studies of Nucleosome Interactions by Solid-State NMR Spectroscopy.

Authors:  ShengQi Xiang; Ulric B le Paige; Velten Horn; Klaartje Houben; Marc Baldus; Hugo van Ingen
Journal:  Angew Chem Int Ed Engl       Date:  2018-03-13       Impact factor: 15.336

Review 9.  Emerging Contributions of Solid-State NMR Spectroscopy to Chromatin Structural Biology.

Authors:  Bryce E Ackermann; Galia T Debelouchina
Journal:  Front Mol Biosci       Date:  2021-10-11
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  2 in total

1.  Virtual Special Issue: Epigenetics 2022.

Authors:  Courtney C Aldrich; Félix Calderón; Stuart J Conway; Chuan He; Jacob M Hooker; Donna M Huryn; Craig W Lindsley; Dennis C Liotta; Christa E Müller
Journal:  ACS Pharmacol Transl Sci       Date:  2022-09-09

2.  Virtual Special Issue: Epigenetics 2022.

Authors:  Courtney C Aldrich; Félix Calderón; Stuart J Conway; Chuan He; Jacob M Hooker; Donna M Huryn; Craig W Lindsley; Dennis C Liotta; Christa E Müller
Journal:  ACS Med Chem Lett       Date:  2022-10-13       Impact factor: 4.632

  2 in total

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