Literature DB >> 29477337

Fuzziness in Protein Interactions-A Historical Perspective.

Monika Fuxreiter1.   

Abstract

The proposal that coupled folding to binding is not an obligatory mechanism for intrinsically disordered (ID) proteins was put forward 10 years ago. The notion of fuzziness implies that conformational heterogeneity can be maintained upon interactions of ID proteins, which has a functional impact either on regulated assembly or activity of the corresponding complexes. Here I review how the concept has evolved in the past decade, via increasing experimental data providing insights into the mechanisms, pathways and regulatory modes. The effects of structural diversity and transient contacts on protein assemblies have been collected and systematically analyzed (Fuzzy Complexes Database, http://protdyn-database.org). Fuzziness has also been exploited as a framework to decipher molecular organization of higher-order protein structures. Quantification of conformational heterogeneity opens exciting future perspectives for drug discovery from small molecule-ID protein interactions to supramolecular assemblies.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  conformational heterogeneity; context-dependence; fuzzy complex; protein interaction; structure-function relationship

Mesh:

Substances:

Year:  2018        PMID: 29477337     DOI: 10.1016/j.jmb.2018.02.015

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  52 in total

1.  Disorder Mediated Oligomerization of DISC1 Proteins Revealed by Coarse-Grained Molecular Dynamics Simulations.

Authors:  Julien Roche; Davit A Potoyan
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Review 2.  Features of molecular recognition of intrinsically disordered proteins via coupled folding and binding.

Authors:  Jing Yang; Meng Gao; Junwen Xiong; Zhengding Su; Yongqi Huang
Journal:  Protein Sci       Date:  2019-09-04       Impact factor: 6.725

3.  Concomitant disorder and high-affinity zinc binding in the human zinc- and iron-regulated transport protein 4 intracellular loop.

Authors:  Elizabeth M Bafaro; Mark W Maciejewski; Jeffrey C Hoch; Robert E Dempski
Journal:  Protein Sci       Date:  2019-03-12       Impact factor: 6.725

Review 4.  Protein phase separation: A novel therapy for cancer?

Authors:  Wei Wang; Yingqian Chen; Aixiao Xu; Minyi Cai; Ji Cao; Hong Zhu; Bo Yang; Xuejing Shao; Meidan Ying; Qiaojun He
Journal:  Br J Pharmacol       Date:  2020-09-28       Impact factor: 8.739

Review 5.  Histone Tail Conformations: A Fuzzy Affair with DNA.

Authors:  Mohamed Ghoneim; Harrison A Fuchs; Catherine A Musselman
Journal:  Trends Biochem Sci       Date:  2021-02-04       Impact factor: 13.807

6.  Measuring Intrinsic Disorder and Tracking Conformational Transitions Using Rosetta ResidueDisorder.

Authors:  Justin T Seffernick; He Ren; Stephanie S Kim; Steffen Lindert
Journal:  J Phys Chem B       Date:  2019-08-14       Impact factor: 2.991

7.  Position-, disorder-, and salt-dependent diffusion in binding-coupled-folding of intrinsically disordered proteins.

Authors:  Xiakun Chu; Jin Wang
Journal:  Phys Chem Chem Phys       Date:  2019-03-06       Impact factor: 3.676

Review 8.  Restriction of HIV-1 and other retroviruses by TRIM5.

Authors:  Barbie K Ganser-Pornillos; Owen Pornillos
Journal:  Nat Rev Microbiol       Date:  2019-07-16       Impact factor: 60.633

9.  Intrinsically Disordered Proteins: Structure, Function and Therapeutics.

Authors:  Jianhan Chen; Richard W Kriwacki
Journal:  J Mol Biol       Date:  2018-06-12       Impact factor: 5.469

10.  Modeling beta-sheet peptide-protein interactions: Rosetta FlexPepDock in CAPRI rounds 38-45.

Authors:  Alisa Khramushin; Orly Marcu; Nawsad Alam; Orly Shimony; Dzmitry Padhorny; Emiliano Brini; Ken A Dill; Sandor Vajda; Dima Kozakov; Ora Schueler-Furman
Journal:  Proteins       Date:  2020-01-06
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