Literature DB >> 25855634

Structural characterization of toxic oligomers that are kinetically trapped during α-synuclein fibril formation.

Serene W Chen1, Srdja Drakulic2, Emma Deas3, Myriam Ouberai4, Francesco A Aprile1, Rocío Arranz2, Samuel Ness1, Cintia Roodveldt5, Tim Guilliams1, Erwin J De-Genst1, David Klenerman1, Nicholas W Wood3, Tuomas P J Knowles1, Carlos Alfonso6, Germán Rivas6, Andrey Y Abramov3, José María Valpuesta2, Christopher M Dobson7, Nunilo Cremades7.   

Abstract

We describe the isolation and detailed structural characterization of stable toxic oligomers of α-synuclein that have accumulated during the process of amyloid formation. Our approach has allowed us to identify distinct subgroups of oligomers and to probe their molecular architectures by using cryo-electron microscopy (cryoEM) image reconstruction techniques. Although the oligomers exist in a range of sizes, with different extents and nature of β-sheet content and exposed hydrophobicity, they all possess a hollow cylindrical architecture with similarities to certain types of amyloid fibril, suggesting that the accumulation of at least some forms of amyloid oligomers is likely to be a consequence of very slow rates of rearrangement of their β-sheet structures. Our findings reveal the inherent multiplicity of the process of protein misfolding and the key role the β-sheet geometry acquired in the early stages of the self-assembly process plays in dictating the kinetic stability and the pathological nature of individual oligomeric species.

Entities:  

Keywords:  amyloid aggregation; cryoelectron microscopy; neurodegeneration; protein misfolding; toxic oligomer

Mesh:

Substances:

Year:  2015        PMID: 25855634      PMCID: PMC4413268          DOI: 10.1073/pnas.1421204112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  65 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  HYDROMIC: prediction of hydrodynamic properties of rigid macromolecular structures obtained from electron microscopy images.

Authors:  J García de la Torre; O Llorca; J L Carrascosa; J M Valpuesta
Journal:  Eur Biophys J       Date:  2001-10       Impact factor: 1.733

Review 3.  Protein folding and misfolding.

Authors:  Christopher M Dobson
Journal:  Nature       Date:  2003-12-18       Impact factor: 49.962

4.  Xmipp: An Image Processing Package for Electron Microscopy

Authors: 
Journal:  J Struct Biol       Date:  1996-10       Impact factor: 2.867

5.  Human alpha-synuclein over-expression increases intracellular reactive oxygen species levels and susceptibility to dopamine.

Authors:  Eunsung Junn; M Maral Mouradian
Journal:  Neurosci Lett       Date:  2002-03-08       Impact factor: 3.046

Review 6.  Metals, toxicity and oxidative stress.

Authors:  M Valko; H Morris; M T D Cronin
Journal:  Curr Med Chem       Date:  2005       Impact factor: 4.530

7.  Alpha-synuclein, especially the Parkinson's disease-associated mutants, forms pore-like annular and tubular protofibrils.

Authors:  Hilal A Lashuel; Benjamin M Petre; Joseph Wall; Martha Simon; Richard J Nowak; Thomas Walz; Peter T Lansbury
Journal:  J Mol Biol       Date:  2002-10-04       Impact factor: 5.469

Review 8.  Toxicity of amyloid beta peptide: tales of calcium, mitochondria, and oxidative stress.

Authors:  Laura Canevari; Andrey Y Abramov; Michael R Duchen
Journal:  Neurochem Res       Date:  2004-03       Impact factor: 3.996

9.  The N-terminus of α-synuclein is essential for both monomeric and oligomeric interactions with membranes.

Authors:  Nikolai Lorenzen; Lasse Lemminger; Jannik Nedergaard Pedersen; Søren Bang Nielsen; Daniel Erik Otzen
Journal:  FEBS Lett       Date:  2013-12-25       Impact factor: 4.124

10.  A rationally designed six-residue swap generates comparability in the aggregation behavior of α-synuclein and β-synuclein.

Authors:  Cintia Roodveldt; August Andersson; Erwin J De Genst; Adahir Labrador-Garrido; Alexander K Buell; Christopher M Dobson; Gian Gaetano Tartaglia; Michele Vendruscolo
Journal:  Biochemistry       Date:  2012-10-22       Impact factor: 3.162

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  160 in total

1.  Transient β-hairpin formation in α-synuclein monomer revealed by coarse-grained molecular dynamics simulation.

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2.  Coupling of the non-amyloid-component (NAC) domain and the KTK(E/Q)GV repeats stabilize the α-synuclein fibrils.

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Journal:  Eur J Med Chem       Date:  2016-01-25       Impact factor: 6.514

3.  Potential Artifacts in Sample Preparation Methods Used for Imaging Amyloid Oligomers and Protofibrils due to Surface-Mediated Fibril Formation.

Authors:  Yi-Chih Lin; Milton H Repollet-Pedrosa; John J Ferrie; E James Petersson; Zahra Fakhraai
Journal:  J Phys Chem B       Date:  2017-03-20       Impact factor: 2.991

Review 4.  Membranes as modulators of amyloid protein misfolding and target of toxicity.

Authors:  Anoop Rawat; Ralf Langen; Jobin Varkey
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-04-25       Impact factor: 3.747

5.  3,4-Dihydroxyphenylacetaldehyde-Induced Protein Modifications and Their Mitigation by N-Acetylcysteine.

Authors:  Yunden Jinsmaa; Yehonatan Sharabi; Patti Sullivan; Risa Isonaka; David S Goldstein
Journal:  J Pharmacol Exp Ther       Date:  2018-04-26       Impact factor: 4.030

6.  Anatomy of a selectively coassembled β-sheet peptide nanofiber.

Authors:  Qing Shao; Kong M Wong; Dillon T Seroski; Yiming Wang; Renjie Liu; Anant K Paravastu; Gregory A Hudalla; Carol K Hall
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-18       Impact factor: 11.205

7.  Critical Influence of Cosolutes and Surfaces on the Assembly of Serpin-Derived Amyloid Fibrils.

Authors:  Michael W Risør; Dennis W Juhl; Morten Bjerring; Joachim Mathiesen; Jan J Enghild; Niels C Nielsen; Daniel E Otzen
Journal:  Biophys J       Date:  2017-08-08       Impact factor: 4.033

8.  A natural product inhibits the initiation of α-synuclein aggregation and suppresses its toxicity.

Authors:  Michele Perni; Céline Galvagnion; Alexander Maltsev; Georg Meisl; Martin B D Müller; Pavan K Challa; Julius B Kirkegaard; Patrick Flagmeier; Samuel I A Cohen; Roberta Cascella; Serene W Chen; Ryan Limbocker; Pietro Sormanni; Gabriella T Heller; Francesco A Aprile; Nunilo Cremades; Cristina Cecchi; Fabrizio Chiti; Ellen A A Nollen; Tuomas P J Knowles; Michele Vendruscolo; Adriaan Bax; Michael Zasloff; Christopher M Dobson
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-17       Impact factor: 11.205

9.  Conformational Dynamics of Specific Aβ Oligomers Govern Their Ability To Replicate and Induce Neuronal Apoptosis.

Authors:  Dexter N Dean; Kayla M Pate; Melissa A Moss; Vijayaraghavan Rangachari
Journal:  Biochemistry       Date:  2016-04-07       Impact factor: 3.162

10.  Polyphosphate: A Conserved Modifier of Amyloidogenic Processes.

Authors:  Claudia M Cremers; Daniela Knoefler; Stephanie Gates; Nicholas Martin; Jan-Ulrik Dahl; Justine Lempart; Lihan Xie; Matthew R Chapman; Veronica Galvan; Daniel R Southworth; Ursula Jakob
Journal:  Mol Cell       Date:  2016-08-25       Impact factor: 17.970

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