Literature DB >> 33468677

Acceleration of catalysis in dihydrofolate reductase by transient, site-specific photothermal excitation.

Rachel Kozlowski1, Jing Zhao1, R Brian Dyer2.   

Abstract

We have studied the role of protein dynamics in chemical catalysis in the enzyme dihydrofolate reductase (DHFR), using a pump-probe method that employs pulsed-laser photothermal heating of a gold nanoparticle (AuNP) to directly excite a local region of the protein structure and transient absorbance to probe the effect on enzyme activity. Enzyme activity is accelerated by pulsed-laser excitation when the AuNP is attached close to a network of coupled motions in DHFR (on the FG loop, containing residues 116-132, or on a nearby alpha helix). No rate acceleration is observed when the AuNP is attached away from the network (distal mutant and His-tagged mutant) with pulsed excitation, or for any attachment site with continuous wave excitation. We interpret these results within an energy landscape model in which transient, site-specific addition of energy to the enzyme speeds up the search for reactive conformations by activating motions that facilitate this search.

Entities:  

Keywords:  dynamics; enzyme; nanoparticles; photothermal

Mesh:

Substances:

Year:  2021        PMID: 33468677      PMCID: PMC7848751          DOI: 10.1073/pnas.2014592118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   12.779


  47 in total

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Journal:  Phys Rev Lett       Date:  2001-12-19       Impact factor: 9.161

2.  Protein motions and dynamic effects in enzyme catalysis.

Authors:  Louis Y P Luk; E Joel Loveridge; Rudolf K Allemann
Journal:  Phys Chem Chem Phys       Date:  2015-12-14       Impact factor: 3.676

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Journal:  Science       Date:  2006-09-15       Impact factor: 47.728

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Authors:  J R Exequiel T Pineda; Robert Callender; Steven D Schwartz
Journal:  Biophys J       Date:  2007-05-04       Impact factor: 4.033

5.  Catalysis by dihydrofolate reductase and other enzymes arises from electrostatic preorganization, not conformational motions.

Authors:  Andrew J Adamczyk; Jie Cao; Shina C L Kamerlin; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-10       Impact factor: 11.205

Review 6.  Emerging advances in nanomedicine with engineered gold nanostructures.

Authors:  Joseph A Webb; Rizia Bardhan
Journal:  Nanoscale       Date:  2014-01-21       Impact factor: 7.790

7.  Modulating the activity of protein conjugated to gold nanoparticles by site-directed orientation and surface density of bound protein.

Authors:  Feng Liu; Lei Wang; Hongwei Wang; Lin Yuan; Jingwen Li; John Law Brash; Hong Chen
Journal:  ACS Appl Mater Interfaces       Date:  2015-02-04       Impact factor: 9.229

8.  Network of remote and local protein dynamics in dihydrofolate reductase catalysis.

Authors:  Priyanka Singh; Kevin Francis; Amnon Kohen
Journal:  ACS Catal       Date:  2015-04-08       Impact factor: 13.084

9.  Response of villin headpiece-capped gold nanoparticles to ultrafast laser heating.

Authors:  Shabir Hassan; Marco Schade; Christopher P Shaw; Raphaël Lévy; Peter Hamm
Journal:  J Phys Chem B       Date:  2014-03-13       Impact factor: 2.991

Review 10.  Linking protein motion to enzyme catalysis.

Authors:  Priyanka Singh; Thelma Abeysinghe; Amnon Kohen
Journal:  Molecules       Date:  2015-01-13       Impact factor: 4.411

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  1 in total

1.  Single-Molecule Sampling of Dihydrofolate Reductase Shows Kinetic Pauses and an Endosteric Effect Linked to Catalysis.

Authors:  Nicole Stéphanie Galenkamp; Giovanni Maglia
Journal:  ACS Catal       Date:  2022-01-05       Impact factor: 13.084

  1 in total

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