Literature DB >> 25854702

Protein motions and dynamic effects in enzyme catalysis.

Louis Y P Luk1, E Joel Loveridge1, Rudolf K Allemann1.   

Abstract

The role of protein motions in promoting the chemical step of enzyme catalysed reactions remains a subject of considerable debate. Here, a unified view of the role of protein dynamics in dihydrofolate reductase catalysis is described. Recently the role of such motions has been investigated by characterising the biophysical properties of isotopically substituted enzymes through a combination of experimental and computational analyses. Together with previous work, these results suggest that dynamic coupling to the chemical coordinate is detrimental to catalysis and may have been selected against during DHFR evolution. The full catalytic power of Nature's catalysts appears to depend on finely tuning protein motions in each step of the catalytic cycle.

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Year:  2015        PMID: 25854702     DOI: 10.1039/c5cp00794a

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  19 in total

1.  Cryo-Cooling Effect on DHFR Crystal Studied by Replica-Exchange Molecular Dynamics Simulations.

Authors:  Tetsuro Nagai; Florence Tama; Osamu Miyashita
Journal:  Biophys J       Date:  2018-12-13       Impact factor: 4.033

2.  Activity-Related Microsecond Dynamics Revealed by Temperature-Jump Förster Resonance Energy Transfer Measurements on Thermophilic Alcohol Dehydrogenase.

Authors:  Morgan B Vaughn; Jianyu Zhang; Thomas G Spiro; R Brian Dyer; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2018-01-11       Impact factor: 15.419

3.  Hydrogen deuterium exchange defines catalytically linked regions of protein flexibility in the catechol O-methyltransferase reaction.

Authors:  Jianyu Zhang; Jeremy L Balsbaugh; Shuaihua Gao; Natalie G Ahn; Judith P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-05       Impact factor: 11.205

4.  Role of Active Site Loop Dynamics in Mediating Ligand Release from E. coli Dihydrofolate Reductase.

Authors:  Amrinder Singh; R Bryn Fenwick; H Jane Dyson; Peter E Wright
Journal:  Biochemistry       Date:  2021-08-24       Impact factor: 3.321

5.  Acceleration of catalysis in dihydrofolate reductase by transient, site-specific photothermal excitation.

Authors:  Rachel Kozlowski; Jing Zhao; R Brian Dyer
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-26       Impact factor: 12.779

6.  Cofactor-Mediated Conformational Dynamics Promote Product Release From Escherichia coli Dihydrofolate Reductase via an Allosteric Pathway.

Authors:  David Oyen; R Bryn Fenwick; Robyn L Stanfield; H Jane Dyson; Peter E Wright
Journal:  J Am Chem Soc       Date:  2015-07-14       Impact factor: 15.419

7.  Halocarbon emissions by selected tropical seaweeds: species-specific and compound-specific responses under changing pH.

Authors:  Paramjeet Kaur Mithoo-Singh; Fiona S-L Keng; Siew-Moi Phang; Emma C Leedham Elvidge; William T Sturges; Gill Malin; Noorsaadah Abd Rahman
Journal:  PeerJ       Date:  2017-01-25       Impact factor: 2.984

Review 8.  Enzyme Catalysis To Power Micro/Nanomachines.

Authors:  Xing Ma; Ana C Hortelão; Tania Patiño; Samuel Sánchez
Journal:  ACS Nano       Date:  2016-10-03       Impact factor: 15.881

9.  Role of Conformational Motions in Enzyme Function: Selected Methodologies and Case Studies.

Authors:  Chitra Narayanan; David N Bernard; Nicolas Doucet
Journal:  Catalysts       Date:  2016-05-27       Impact factor: 4.146

10.  Isotope Substitution of Promiscuous Alcohol Dehydrogenase Reveals the Origin of Substrate Preference in the Transition State.

Authors:  Enas M Behiry; J Javier Ruiz-Pernia; Louis Luk; Iñaki Tuñón; Vicent Moliner; Rudolf K Allemann
Journal:  Angew Chem Int Ed Engl       Date:  2018-02-19       Impact factor: 15.336

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