Literature DB >> 33466427

Biological Nanopores: Engineering on Demand.

Ana Crnković1, Marija Srnko1, Gregor Anderluh1.   

Abstract

Nanopore-based sensing is a powerful technique for the detection of diverse organic and inorganic molecules, long-read sequencing of nucleic acids, and single-molecule analyses of enzymatic reactions. Selected from natural sources, protein-based nanopores enable rapid, label-free detection of analytes. Furthermore, these proteins are easy to produce, form pores with defined sizes, and can be easily manipulated with standard molecular biology techniques. The range of possible analytes can be extended by using externally added adapter molecules. Here, we provide an overview of current nanopore applications with a focus on engineering strategies and solutions.

Entities:  

Keywords:  aptamers; nanopores; oligomerization; pore-forming toxins; sensing

Year:  2021        PMID: 33466427      PMCID: PMC7824896          DOI: 10.3390/life11010027

Source DB:  PubMed          Journal:  Life (Basel)        ISSN: 2075-1729


  212 in total

1.  Detecting protein analytes that modulate transmembrane movement of a polymer chain within a single protein pore.

Authors:  L Movileanu; S Howorka; O Braha; H Bayley
Journal:  Nat Biotechnol       Date:  2000-10       Impact factor: 54.908

2.  Residue ionization and ion transport through OmpF channels.

Authors:  Ekaterina M Nestorovich; Tatiana K Rostovtseva; Sergey M Bezrukov
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

3.  Probing single nanometer-scale pores with polymeric molecular rulers.

Authors:  Sarah E Henrickson; Edmund A DiMarzio; Qian Wang; Vincent M Stanford; John J Kasianowicz
Journal:  J Chem Phys       Date:  2010-04-07       Impact factor: 3.488

4.  Electroosmotic Trap Against the Electrophoretic Force Near a Protein Nanopore Reveals Peptide Dynamics During Capture and Translocation.

Authors:  Alina Asandei; Irina Schiopu; Mauro Chinappi; Chang Ho Seo; Yoonkyung Park; Tudor Luchian
Journal:  ACS Appl Mater Interfaces       Date:  2016-05-16       Impact factor: 9.229

5.  Real-time sensing and discrimination of single chemicals using the channel of phi29 DNA packaging nanomotor.

Authors:  Farzin Haque; Jennifer Lunn; Huaming Fang; David Smithrud; Peixuan Guo
Journal:  ACS Nano       Date:  2012-04-09       Impact factor: 15.881

6.  Resolved single-molecule detection of individual species within a mixture of anti-biotin antibodies using an engineered monomeric nanopore.

Authors:  Monifa Fahie; Christina Chisholm; Min Chen
Journal:  ACS Nano       Date:  2015-01-22       Impact factor: 15.881

7.  Low conductance states of a single ion channel are not 'closed'.

Authors:  Y E Korchev; C L Bashford; G M Alder; J J Kasianowicz; C A Pasternak
Journal:  J Membr Biol       Date:  1995-10       Impact factor: 1.843

8.  Electrical recognition of the twenty proteinogenic amino acids using an aerolysin nanopore.

Authors:  Hadjer Ouldali; Kumar Sarthak; Tobias Ensslen; Fabien Piguet; Philippe Manivet; Juan Pelta; Jan C Behrends; Aleksei Aksimentiev; Abdelghani Oukhaled
Journal:  Nat Biotechnol       Date:  2019-12-16       Impact factor: 54.908

Review 9.  Comparing Current Noise in Biological and Solid-State Nanopores.

Authors:  Alessio Fragasso; Sonja Schmid; Cees Dekker
Journal:  ACS Nano       Date:  2020-02-17       Impact factor: 15.881

10.  Giant single molecule chemistry events observed from a tetrachloroaurate(III) embedded Mycobacterium smegmatis porin A nanopore.

Authors:  Jiao Cao; Wendong Jia; Jinyue Zhang; Xiumei Xu; Shuanghong Yan; Yuqin Wang; Panke Zhang; Hong-Yuan Chen; Shuo Huang
Journal:  Nat Commun       Date:  2019-12-11       Impact factor: 14.919

View more
  7 in total

1.  Modern venomics-Current insights, novel methods, and future perspectives in biological and applied animal venom research.

Authors:  Bjoern M von Reumont; Gregor Anderluh; Agostinho Antunes; Naira Ayvazyan; Dimitris Beis; Figen Caliskan; Ana Crnković; Maik Damm; Sebastien Dutertre; Lars Ellgaard; Goran Gajski; Hannah German; Beata Halassy; Benjamin-Florian Hempel; Tim Hucho; Nasit Igci; Maria P Ikonomopoulou; Izhar Karbat; Maria I Klapa; Ivan Koludarov; Jeroen Kool; Tim Lüddecke; Riadh Ben Mansour; Maria Vittoria Modica; Yehu Moran; Ayse Nalbantsoy; María Eugenia Pachón Ibáñez; Alexios Panagiotopoulos; Eitan Reuveny; Javier Sánchez Céspedes; Andy Sombke; Joachim M Surm; Eivind A B Undheim; Aida Verdes; Giulia Zancolli
Journal:  Gigascience       Date:  2022-05-18       Impact factor: 7.658

2.  Enhanced Optical Spectroscopy for Multiplexed DNA and Protein-Sequencing with Plasmonic Nanopores: Challenges and Prospects.

Authors:  Wang Li; Juan Zhou; Nicolò Maccaferri; Roman Krahne; Kang Wang; Denis Garoli
Journal:  Anal Chem       Date:  2022-01-01       Impact factor: 6.986

Review 3.  Cytolysin A (ClyA): A Bacterial Virulence Factor with Potential Applications in Nanopore Technology, Vaccine Development, and Tumor Therapy.

Authors:  Kazunori Murase
Journal:  Toxins (Basel)       Date:  2022-01-21       Impact factor: 4.546

Review 4.  Challenges and approaches to studying pore-forming proteins.

Authors:  Joshua T Benton; Charles Bayly-Jones
Journal:  Biochem Soc Trans       Date:  2021-12-17       Impact factor: 5.407

5.  Simulation Study of Chain-like Body Translocation through Conical Pores in Thick Membranes.

Authors:  Zbigniew Domański; Andrzej Z Grzybowski
Journal:  Membranes (Basel)       Date:  2022-01-24

Review 6.  Biological nanopores for single-molecule sensing.

Authors:  Simon Finn Mayer; Chan Cao; Matteo Dal Peraro
Journal:  iScience       Date:  2022-03-23

Review 7.  Epigenetic tumor heterogeneity in the era of single-cell profiling with nanopore sequencing.

Authors:  Yohannis Wondwosen Ahmed; Berhan Ababaw Alemu; Sisay Addisu Bekele; Solomon Tebeje Gizaw; Muluken Fekadie Zerihun; Endriyas Kelta Wabalo; Maria Degef Teklemariam; Tsehayneh Kelemu Mihrete; Endris Yibru Hanurry; Tensae Gebru Amogne; Assaye Desalegne Gebrehiwot; Tamirat Nida Berga; Ebsitu Abate Haile; Dessiet Oma Edo; Bizuwork Derebew Alemu
Journal:  Clin Epigenetics       Date:  2022-08-27       Impact factor: 7.259

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.