Literature DB >> 33443210

Precise genome engineering in Drosophila using prime editing.

Justin A Bosch1, Gabriel Birchak2, Norbert Perrimon1,3.   

Abstract

Precise genome editing is a valuable tool to study gene function in model organisms. Prime editing, a precise editing system developed in mammalian cells, does not require double-strand breaks or donor DNA and has low off-target effects. Here, we applied prime editing for the model organism Drosophila melanogaster and developed conditions for optimal editing. By expressing prime editing components in cultured cells or somatic cells of transgenic flies, we precisely introduce premature stop codons in three classical visible marker genes, ebony, white, and forked Furthermore, by restricting editing to germ cells, we demonstrate efficient germ-line transmission of a precise edit in ebony to 36% of progeny. Our results suggest that prime editing is a useful system in Drosophila to study gene function, such as engineering precise point mutations, deletions, or epitope tags.

Entities:  

Keywords:  CRISPR; Drosophila; genome engineering; pegRNA; prime editing

Mesh:

Substances:

Year:  2021        PMID: 33443210      PMCID: PMC7817132          DOI: 10.1073/pnas.2021996118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  53 in total

1.  Robust CRISPR/Cas9-Mediated Tissue-Specific Mutagenesis Reveals Gene Redundancy and Perdurance in Drosophila.

Authors:  Amy R Poe; Bei Wang; Maria L Sapar; Hui Ji; Kailyn Li; Tireniolu Onabajo; Rushaniya Fazliyeva; Mary Gibbs; Yue Qiu; Yuzhao Hu; Chun Han
Journal:  Genetics       Date:  2018-11-30       Impact factor: 4.562

2.  Plant Prime Editors Enable Precise Gene Editing in Rice Cells.

Authors:  Xu Tang; Simon Sretenovic; Qiurong Ren; Xinyu Jia; Mengke Li; Tingting Fan; Desuo Yin; Shuyue Xiang; Yachong Guo; Li Liu; Xuelian Zheng; Yiping Qi; Yong Zhang
Journal:  Mol Plant       Date:  2020-03-25       Impact factor: 13.164

3.  Precise Modifications of Both Exogenous and Endogenous Genes in Rice by Prime Editing.

Authors:  Huiyuan Li; Jingying Li; Jilin Chen; Lei Yan; Lanqin Xia
Journal:  Mol Plant       Date:  2020-03-25       Impact factor: 13.164

4.  Efficient Generation and Correction of Mutations in Human iPS Cells Utilizing mRNAs of CRISPR Base Editors and Prime Editors.

Authors:  Duran Sürün; Aksana Schneider; Jovan Mircetic; Katrin Neumann; Felix Lansing; Maciej Paszkowski-Rogacz; Vanessa Hänchen; Min Ae Lee-Kirsch; Frank Buchholz
Journal:  Genes (Basel)       Date:  2020-05-06       Impact factor: 4.096

5.  Optimized CRISPR/Cas tools for efficient germline and somatic genome engineering in Drosophila.

Authors:  Fillip Port; Hui-Min Chen; Tzumin Lee; Simon L Bullock
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-07       Impact factor: 11.205

6.  Rapid Screening for CRISPR-Directed Editing of the Drosophila Genome Using white Coconversion.

Authors:  Daniel Tianfang Ge; Cindy Tipping; Michael H Brodsky; Phillip D Zamore
Journal:  G3 (Bethesda)       Date:  2016-10-13       Impact factor: 3.154

7.  A versatile toolkit for CRISPR-Cas13-based RNA manipulation in Drosophila.

Authors:  Nhan Huynh; Noah Depner; Raegan Larson; Kirst King-Jones
Journal:  Genome Biol       Date:  2020-11-17       Impact factor: 13.583

8.  Engineering herbicide resistance via prime editing in rice.

Authors:  Haroon Butt; Gundra Sivakrishna Rao; Khalid Sedeek; Rashid Aman; Radwa Kamel; Magdy Mahfouz
Journal:  Plant Biotechnol J       Date:  2020-06-11       Impact factor: 9.803

9.  Prime editing efficiently generates W542L and S621I double mutations in two ALS genes in maize.

Authors:  Yuan-Yuan Jiang; Yi-Ping Chai; Min-Hui Lu; Xiu-Li Han; Qiupeng Lin; Yu Zhang; Qiang Zhang; Yun Zhou; Xue-Chen Wang; Caixia Gao; Qi-Jun Chen
Journal:  Genome Biol       Date:  2020-10-06       Impact factor: 13.583

10.  A web tool for the design of prime-editing guide RNAs.

Authors:  Ryan D Chow; Jennifer S Chen; Johanna Shen; Sidi Chen
Journal:  Nat Biomed Eng       Date:  2020-09-28       Impact factor: 25.671

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  21 in total

1.  Protein visualization and manipulation in Drosophila through the use of epitope tags recognized by nanobodies.

Authors:  Jun Xu; Ah-Ram Kim; Ross W Cheloha; Fabian A Fischer; Joshua Shing Shun Li; Yuan Feng; Emily Stoneburner; Richard Binari; Stephanie E Mohr; Jonathan Zirin; Hidde L Ploegh; Norbert Perrimon
Journal:  Elife       Date:  2022-01-25       Impact factor: 8.140

Review 2.  State-of-the-art CRISPR for in vivo and cell-based studies in Drosophila.

Authors:  Jonathan Zirin; Justin Bosch; Raghuvir Viswanatha; Stephanie E Mohr; Norbert Perrimon
Journal:  Trends Genet       Date:  2021-12-18       Impact factor: 11.639

3.  Base Editing of Somatic Cells Using CRISPR-Cas9 in Drosophila.

Authors:  Elizabeth Marr; Christopher J Potter
Journal:  CRISPR J       Date:  2021-11-23

4.  Prime Editing for Precise Genome Engineering in Drosophila.

Authors:  Justin A Bosch; Norbert Perrimon
Journal:  Methods Mol Biol       Date:  2022

Review 5.  Speciation and adaptation research meets genome editing.

Authors:  Satoshi Ansai; Jun Kitano
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2022-05-30       Impact factor: 6.671

6.  Genome-wide specificity of prime editors in plants.

Authors:  Shuai Jin; Qiupeng Lin; Yingfeng Luo; Zixu Zhu; Guanwen Liu; Yunjia Li; Kunling Chen; Jin-Long Qiu; Caixia Gao
Journal:  Nat Biotechnol       Date:  2021-04-15       Impact factor: 54.908

Review 7.  CRISPR-based genome editing through the lens of DNA repair.

Authors:  Tarun S Nambiar; Lou Baudrier; Pierre Billon; Alberto Ciccia
Journal:  Mol Cell       Date:  2022-01-20       Impact factor: 17.970

Review 8.  In vivo somatic cell base editing and prime editing.

Authors:  Gregory A Newby; David R Liu
Journal:  Mol Ther       Date:  2021-09-10       Impact factor: 11.454

9.  An engineered prime editor with enhanced editing efficiency in plants.

Authors:  Yuan Zong; Yijing Liu; Chenxiao Xue; Boshu Li; Xiangyang Li; Yanpeng Wang; Ji Li; Guanwen Liu; Xingxu Huang; Xiaofeng Cao; Caixia Gao
Journal:  Nat Biotechnol       Date:  2022-03-24       Impact factor: 68.164

10.  Dual-AAV delivering split prime editor system for in vivo genome editing.

Authors:  Shengyao Zhi; Yuxi Chen; Guanglan Wu; Jinkun Wen; Jinni Wu; Qianyi Liu; Yang Li; Rui Kang; Sihui Hu; Jiahui Wang; Puping Liang; Junjiu Huang
Journal:  Mol Ther       Date:  2021-07-21       Impact factor: 11.454

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