Literature DB >> 26296162

DNA methylation pathways and their crosstalk with histone methylation.

Jiamu Du1, Lianna M Johnson2, Steven E Jacobsen2, Dinshaw J Patel3.   

Abstract

Methylation of DNA and of histone 3 at Lys 9 (H3K9) are highly correlated with gene silencing in eukaryotes from fungi to humans. Both of these epigenetic marks need to be established at specific regions of the genome and then maintained at these sites through cell division. Protein structural domains that specifically recognize methylated DNA and methylated histones are key for targeting enzymes that catalyse these marks to appropriate genome sites. Genetic, genomic, structural and biochemical data reveal connections between these two epigenetic marks, and these domains mediate much of the crosstalk.

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Year:  2015        PMID: 26296162      PMCID: PMC4672940          DOI: 10.1038/nrm4043

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  170 in total

1.  Partitioning and plasticity of repressive histone methylation states in mammalian chromatin.

Authors:  Antoine H F M Peters; Stefan Kubicek; Karl Mechtler; Roderick J O'Sullivan; Alwin A H A Derijck; Laura Perez-Burgos; Alexander Kohlmaier; Susanne Opravil; Makoto Tachibana; Yoichi Shinkai; Joost H A Martens; Thomas Jenuwein
Journal:  Mol Cell       Date:  2003-12       Impact factor: 17.970

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Authors:  E B Cambareri; B C Jensen; E Schabtach; E U Selker
Journal:  Science       Date:  1989-06-30       Impact factor: 47.728

Review 3.  RNA-directed DNA methylation: an epigenetic pathway of increasing complexity.

Authors:  Marjori A Matzke; Rebecca A Mosher
Journal:  Nat Rev Genet       Date:  2014-05-08       Impact factor: 53.242

4.  Rearrangement of duplicated DNA in specialized cells of Neurospora.

Authors:  E U Selker; E B Cambareri; B C Jensen; K R Haack
Journal:  Cell       Date:  1987-12-04       Impact factor: 41.582

Review 5.  Premeiotic instability of repeated sequences in Neurospora crassa.

Authors:  E U Selker
Journal:  Annu Rev Genet       Date:  1990       Impact factor: 16.830

6.  Chromatin methylation activity of Dnmt3a and Dnmt3a/3L is guided by interaction of the ADD domain with the histone H3 tail.

Authors:  Yingying Zhang; Renata Jurkowska; Szabolcs Soeroes; Arumugam Rajavelu; Arunkumar Dhayalan; Ina Bock; Philipp Rathert; Ole Brandt; Richard Reinhardt; Wolfgang Fischle; Albert Jeltsch
Journal:  Nucleic Acids Res       Date:  2010-03-11       Impact factor: 16.971

7.  ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases.

Authors:  Edward Kraft; Magnolia Bostick; Steven E Jacobsen; Judy Callis
Journal:  Plant J       Date:  2008-09-19       Impact factor: 6.417

8.  The interaction of the SRA domain of ICBP90 with a novel domain of DNMT1 is involved in the regulation of VEGF gene expression.

Authors:  M Achour; X Jacq; P Rondé; M Alhosin; C Charlot; T Chataigneau; M Jeanblanc; M Macaluso; A Giordano; A D Hughes; V B Schini-Kerth; C Bronner
Journal:  Oncogene       Date:  2007-10-15       Impact factor: 9.867

9.  De novo DNA methylation of endogenous retroviruses is shaped by KRAB-ZFPs/KAP1 and ESET.

Authors:  Helen M Rowe; Marc Friedli; Sandra Offner; Sonia Verp; Daniel Mesnard; Julien Marquis; Tugce Aktas; Didier Trono
Journal:  Development       Date:  2013-02-01       Impact factor: 6.868

10.  Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana.

Authors:  Yana V Bernatavichute; Xiaoyu Zhang; Shawn Cokus; Matteo Pellegrini; Steven E Jacobsen
Journal:  PLoS One       Date:  2008-09-08       Impact factor: 3.240

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  299 in total

Review 1.  The First Rule of Plant Transposable Element Silencing: Location, Location, Location.

Authors:  Meredith J Sigman; R Keith Slotkin
Journal:  Plant Cell       Date:  2016-02-11       Impact factor: 11.277

2.  N6-methyladenine DNA Modification in Glioblastoma.

Authors:  Qi Xie; Tao P Wu; Ryan C Gimple; Zheng Li; Briana C Prager; Qiulian Wu; Yang Yu; Pengcheng Wang; Yinsheng Wang; David U Gorkin; Cheng Zhang; Alexis V Dowiak; Kaixuan Lin; Chun Zeng; Yinghui Sui; Leo J Y Kim; Tyler E Miller; Li Jiang; Christine H Lee; Zhi Huang; Xiaoguang Fang; Kui Zhai; Stephen C Mack; Maike Sander; Shideng Bao; Amber E Kerstetter-Fogle; Andrew E Sloan; Andrew Z Xiao; Jeremy N Rich
Journal:  Cell       Date:  2018-11-01       Impact factor: 41.582

3.  Loss of RNA-Directed DNA Methylation in Maize Chromomethylase and DDM1-Type Nucleosome Remodeler Mutants.

Authors:  Fang-Fang Fu; R Kelly Dawe; Jonathan I Gent
Journal:  Plant Cell       Date:  2018-06-08       Impact factor: 11.277

4.  Androgen receptor regulation by histone methyltransferase Suppressor of variegation 3-9 homolog 2 and Melanoma antigen-A11.

Authors:  Emily B Askew; Suxia Bai; Amanda B Parris; John T Minges; Elizabeth M Wilson
Journal:  Mol Cell Endocrinol       Date:  2016-12-29       Impact factor: 4.102

5.  Arabidopsis RNA Polymerases IV and V Are Required To Establish H3K9 Methylation, but Not Cytosine Methylation, on Geminivirus Chromatin.

Authors:  Jamie N Jackel; Jessica M Storer; Tami Coursey; David M Bisaro
Journal:  J Virol       Date:  2016-07-27       Impact factor: 5.103

6.  Natural variation in DNA methylation homeostasis and the emergence of epialleles.

Authors:  Yinwen Zhang; Jered M Wendte; Lexiang Ji; Robert J Schmitz
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-18       Impact factor: 11.205

7.  Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean.

Authors:  Lexiang Ji; Sandra M Mathioni; Sarah Johnson; Donna Tucker; Adam J Bewick; Kyung Do Kim; Josquin Daron; R Keith Slotkin; Scott A Jackson; Wayne A Parrott; Blake C Meyers; Robert J Schmitz
Journal:  Plant Cell       Date:  2019-08-22       Impact factor: 11.277

8.  Active N6-Methyladenine Demethylation by DMAD Regulates Gene Expression by Coordinating with Polycomb Protein in Neurons.

Authors:  Bing Yao; Yujing Li; Zhiqin Wang; Li Chen; Mickael Poidevin; Can Zhang; Li Lin; Feng Wang; Han Bao; Bin Jiao; Junghwa Lim; Ying Cheng; Luoxiu Huang; Brittany Lynn Phillips; Tianlei Xu; Ranhui Duan; Kenneth H Moberg; Hao Wu; Peng Jin
Journal:  Mol Cell       Date:  2018-08-02       Impact factor: 17.970

9.  Mutations in the DNMT3A DNA methyltransferase in acute myeloid leukemia patients cause both loss and gain of function and differential regulation by protein partners.

Authors:  Jonathan E Sandoval; Yung-Hsin Huang; Abigail Muise; Margaret A Goodell; Norbert O Reich
Journal:  J Biol Chem       Date:  2019-01-31       Impact factor: 5.157

10.  Epigenetic silencing of tumor suppressor Par-4 promotes chemoresistance in recurrent breast cancer.

Authors:  Nathaniel W Mabe; Douglas B Fox; Ryan Lupo; Amy E Decker; Stephanie N Phelps; J Will Thompson; James V Alvarez
Journal:  J Clin Invest       Date:  2018-08-27       Impact factor: 14.808

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