Literature DB >> 33408406

Spatially resolved single-cell genomics and transcriptomics by imaging.

Xiaowei Zhuang1,2,3.   

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Year:  2021        PMID： 33408406     DOI： 10.1038/s41592-020-01037-8

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   47.990


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  43 in total

1.  Single-cell gene expression profiling.

Authors:  Jeffrey M Levsky; Shailesh M Shenoy; Rossanna C Pezo; Robert H Singer
Journal:  Science       Date:  2002-08-02       Impact factor: 47.728

2.  Visualization of single RNA transcripts in situ.

Authors:  A M Femino; F S Fay; K Fogarty; R H Singer
Journal:  Science       Date:  1998-04-24       Impact factor: 47.728

3.  High-performance multiplexed fluorescence in situ hybridization in culture and tissue with matrix imprinting and clearing.

Authors:  Jeffrey R Moffitt; Junjie Hao; Dhananjay Bambah-Mukku; Tian Lu; Catherine Dulac; Xiaowei Zhuang
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-22       Impact factor: 11.205

4.  RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.

Authors:  Kok Hao Chen; Alistair N Boettiger; Jeffrey R Moffitt; Siyuan Wang; Xiaowei Zhuang
Journal:  Science       Date:  2015-04-09       Impact factor: 47.728

5.  Optical imaging. Expansion microscopy.

Authors:  Fei Chen; Paul W Tillberg; Edward S Boyden
Journal:  Science       Date:  2015-01-15       Impact factor: 47.728

6.  Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region.

Authors:  Jeffrey R Moffitt; Dhananjay Bambah-Mukku; Stephen W Eichhorn; Eric Vaughn; Karthik Shekhar; Julio D Perez; Nimrod D Rubinstein; Junjie Hao; Aviv Regev; Catherine Dulac; Xiaowei Zhuang
Journal:  Science       Date:  2018-11-01       Impact factor: 47.728

7.  Imaging individual mRNA molecules using multiple singly labeled probes.

Authors:  Arjun Raj; Patrick van den Bogaard; Scott A Rifkin; Alexander van Oudenaarden; Sanjay Tyagi
Journal:  Nat Methods       Date:  2008-09-21       Impact factor: 28.547

8.  Genome-Scale Imaging of the 3D Organization and Transcriptional Activity of Chromatin.

Authors:  Jun-Han Su; Pu Zheng; Seon S Kinrot; Bogdan Bintu; Xiaowei Zhuang
Journal:  Cell       Date:  2020-08-20       Impact factor: 66.850

9.  Multiplexed imaging of high-density libraries of RNAs with MERFISH and expansion microscopy.

Authors:  Guiping Wang; Jeffrey R Moffitt; Xiaowei Zhuang
Journal:  Sci Rep       Date:  2018-03-19       Impact factor: 4.379

10.  Spatial transcriptome profiling by MERFISH reveals subcellular RNA compartmentalization and cell cycle-dependent gene expression.

Authors:  Chenglong Xia; Jean Fan; George Emanuel; Junjie Hao; Xiaowei Zhuang
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-09       Impact factor: 11.205
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  37 in total

Review 1.  Integrating single-cell and spatial transcriptomics to elucidate intercellular tissue dynamics.

Authors:  Sophia K Longo; Margaret G Guo; Andrew L Ji; Paul A Khavari
Journal:  Nat Rev Genet       Date:  2021-06-18       Impact factor: 53.242

Review 2.  Super-multiplexed vibrational probes: Being colorful makes a difference.

Authors:  Naixin Qian; Wei Min
Journal:  Curr Opin Chem Biol       Date:  2022-01-22       Impact factor: 8.822

Review 3.  Integrative approaches in genome structure analysis.

Authors:  Lorenzo Boninsegna; Asli Yildirim; Yuxiang Zhan; Frank Alber
Journal:  Structure       Date:  2021-12-27       Impact factor: 5.006

Review 4.  What is a cell type and how to define it?

Authors:  Hongkui Zeng
Journal:  Cell       Date:  2022-07-21       Impact factor: 66.850

5.  The Shared Core Resource as a Partner in Innovative Scientific Research: Illustration from an Academic Microscopy Imaging Center.

Authors:  Douglas J Taatjes; Prachi N Ghule; Nicole A Bouffard; Kyra Lee; Nicole M DeLance; Mark F Evans; Donald L Weaver; Nicholas Deakin; Frances E Carr; Brian L Sprague; Gary S Stein; Janet L Stein
Journal:  J Biomol Tech       Date:  2022-03-24

Review 6.  The emerging landscape of spatial profiling technologies.

Authors:  Jeffrey R Moffitt; Emma Lundberg; Holger Heyn
Journal:  Nat Rev Genet       Date:  2022-07-20       Impact factor: 59.581

7.  A gene-expression axis defines neuron behaviour.

Authors:  Hongkui Zeng; Saskia E J de Vries
Journal:  Nature       Date:  2022-07       Impact factor: 69.504

Review 8.  Exploring tissue architecture using spatial transcriptomics.

Authors:  Anjali Rao; Dalia Barkley; Gustavo S França; Itai Yanai
Journal:  Nature       Date:  2021-08-11       Impact factor: 49.962

Review 9.  Spatial Organization of Chromatin: Emergence of Chromatin Structure During Development.

Authors:  Rajarshi P Ghosh; Barbara J Meyer
Journal:  Annu Rev Cell Dev Biol       Date:  2021-07-06       Impact factor: 13.827

10.  geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq.

Authors:  Alsu Missarova; Jaison Jain; Andrew Butler; Shila Ghazanfar; Tim Stuart; Maigan Brusko; Clive Wasserfall; Harry Nick; Todd Brusko; Mark Atkinson; Rahul Satija; John C Marioni
Journal:  Genome Biol       Date:  2021-12-06       Impact factor: 13.583
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