Literature DB >> 35836997

The Shared Core Resource as a Partner in Innovative Scientific Research: Illustration from an Academic Microscopy Imaging Center.

Douglas J Taatjes1, Prachi N Ghule2, Nicole A Bouffard3, Kyra Lee4, Nicole M DeLance3, Mark F Evans5, Donald L Weaver5, Nicholas Deakin6, Frances E Carr7, Brian L Sprague8, Gary S Stein2, Janet L Stein2.   

Abstract

Core facilities have a ubiquitous and increasingly valuable presence at research institutions. Although many shared cores were originally created to provide routine services and access to complex and expensive instrumentation for the research community, they are frequently called upon by investigators to design protocols and procedures to help answer complex research questions. For instance, shared microscopy resources are evolving from providing access to and training on complex imaging instruments to developing detailed innovative protocols and experimental strategies, including sample preparation techniques, staining, complex imaging parameters, and high-level image analyses. These approaches require close intellectual collaboration between core staff and research investigators to formulate and coordinate plans for protocol development suited to the research question. Herein, we provide an example of such coordinated collaboration between a shared microscopy facility and a team of scientists and clinician-investigators to approach a complex multiprobe immunostaining, imaging, and image analysis project investigating the tumor microenvironment from human breast cancer samples. Our hope is that this example may be used to convey to institute administrators the critical importance of the intellectual contributions of the scientific staff in core facilities to research endeavors.
Copyright ©️ 2022 Association of Biomolecular Resource Facilities. All rights reserved.

Entities:  

Keywords:  breast cancer; cell phenotyping; confocal microscopy; core facility; image analysis; immunohistochemistry; spectral imaging; stromal cells

Mesh:

Year:  2022        PMID: 35836997      PMCID: PMC9258914          DOI: 10.7171/3fc1f5fe.2507f36c

Source DB:  PubMed          Journal:  J Biomol Tech        ISSN: 1524-0215


  25 in total

Review 1.  Multi-spectral imaging and linear unmixing add a whole new dimension to laser scanning fluorescence microscopy.

Authors:  M E Dickinson; G Bearman; S Tille; R Lansford; S E Fraser
Journal:  Biotechniques       Date:  2001-12       Impact factor: 1.993

Review 2.  Spectral imaging and linear unmixing in light microscopy.

Authors:  Timo Zimmermann
Journal:  Adv Biochem Eng Biotechnol       Date:  2005       Impact factor: 2.635

3.  Survey on Scientific Shared Resource Rigor and Reproducibility.

Authors:  Kevin L Knudtson; Robert H Carnahan; Rebecca L Hegstad-Davies; Nancy C Fisher; Belynda Hicks; Peter A Lopez; Susan M Meyn; Sheenah M Mische; Frances Weis-Garcia; Lisa D White; Katia Sol-Church
Journal:  J Biomol Tech       Date:  2019-09

4.  One step ahead: Innovation in core facilities.

Authors:  Saskia Lippens; Christophe D'Enfert; Lilla Farkas; Anna Kehres; Bernhard Korn; Mònica Morales; Rainer Pepperkok; Lavanya Premvardhan; Ralph Schlapbach; Andreas Tiran; Doris Meder; Geert Van Minnebruggen
Journal:  EMBO Rep       Date:  2019-03-14       Impact factor: 8.807

5.  Method of the Year 2020: spatially resolved transcriptomics.

Authors: 
Journal:  Nat Methods       Date:  2021-01       Impact factor: 28.547

6.  Accelerating Biomedical Discoveries through Rigor and Transparency.

Authors:  Judith A Hewitt; Liliana L Brown; Stephanie J Murphy; Franziska Grieder; Shai D Silberberg
Journal:  ILAR J       Date:  2017-07-01

7.  Quantitative Multiplex Immunohistochemistry Reveals Myeloid-Inflamed Tumor-Immune Complexity Associated with Poor Prognosis.

Authors:  Takahiro Tsujikawa; Sushil Kumar; Rohan N Borkar; Vahid Azimi; Guillaume Thibault; Young Hwan Chang; Ariel Balter; Rie Kawashima; Gina Choe; David Sauer; Edward El Rassi; Daniel R Clayburgh; Molly F Kulesz-Martin; Eric R Lutz; Lei Zheng; Elizabeth M Jaffee; Patrick Leyshock; Adam A Margolin; Motomi Mori; Joe W Gray; Paul W Flint; Lisa M Coussens
Journal:  Cell Rep       Date:  2017-04-04       Impact factor: 9.423

8.  Seven technologies to watch in 2022.

Authors:  Michael Eisenstein
Journal:  Nature       Date:  2022-01       Impact factor: 49.962

9.  Policy: NIH plans to enhance reproducibility.

Authors:  Francis S Collins; Lawrence A Tabak
Journal:  Nature       Date:  2014-01-30       Impact factor: 49.962

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  1 in total

1.  Novel post-acquisition image processing to attenuate red blood cell autofluorescence for quantitative image analysis.

Authors:  Nicole A Bouffard; Kyra Lee; Nicole M DeLance; Todd Clason; Nimrat Chatterjee; Douglas J Taatjes
Journal:  Histochem Cell Biol       Date:  2022-10-19       Impact factor: 2.531

  1 in total

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