Literature DB >> 33408402

Spatially resolved transcriptomics adds a new dimension to genomics.

Ludvig Larsson1, Jonas Frisén2, Joakim Lundeberg3.   

Abstract

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Year:  2021        PMID： 33408402     DOI： 10.1038/s41592-020-01038-7

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   47.990


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  34 in total

Review 1.  Understanding the Transcriptomic Landscape to Drive New Innovations in Musculoskeletal Regenerative Medicine.

Authors:  Stacey M Thomas; Cheryl L Ackert-Bicknell; Michael J Zuscik; Karin A Payne
Journal:  Curr Osteoporos Rep       Date:  2022-02-14       Impact factor: 5.096

Review 2.  What is a cell type and how to define it?

Authors:  Hongkui Zeng
Journal:  Cell       Date:  2022-07-21       Impact factor: 66.850

3.  The Shared Core Resource as a Partner in Innovative Scientific Research: Illustration from an Academic Microscopy Imaging Center.

Authors:  Douglas J Taatjes; Prachi N Ghule; Nicole A Bouffard; Kyra Lee; Nicole M DeLance; Mark F Evans; Donald L Weaver; Nicholas Deakin; Frances E Carr; Brian L Sprague; Gary S Stein; Janet L Stein
Journal:  J Biomol Tech       Date:  2022-03-24

4.  Alignment and integration of spatial transcriptomics data.

Authors:  Ron Zeira; Max Land; Alexander Strzalkowski; Benjamin J Raphael
Journal:  Nat Methods       Date:  2022-05-16       Impact factor: 47.990

Review 5.  Exploring tissue architecture using spatial transcriptomics.

Authors:  Anjali Rao; Dalia Barkley; Gustavo S França; Itai Yanai
Journal:  Nature       Date:  2021-08-11       Impact factor: 49.962

6.  geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq.

Authors:  Alsu Missarova; Jaison Jain; Andrew Butler; Shila Ghazanfar; Tim Stuart; Maigan Brusko; Clive Wasserfall; Harry Nick; Todd Brusko; Mark Atkinson; Rahul Satija; John C Marioni
Journal:  Genome Biol       Date:  2021-12-06       Impact factor: 13.583

7.  A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation.

Authors:  Zizhen Yao; Cindy T J van Velthoven; Thuc Nghi Nguyen; Jeff Goldy; Adriana E Sedeno-Cortes; Fahimeh Baftizadeh; Darren Bertagnolli; Tamara Casper; Megan Chiang; Kirsten Crichton; Song-Lin Ding; Olivia Fong; Emma Garren; Alexandra Glandon; Nathan W Gouwens; James Gray; Lucas T Graybuck; Michael J Hawrylycz; Daniel Hirschstein; Matthew Kroll; Kanan Lathia; Changkyu Lee; Boaz Levi; Delissa McMillen; Stephanie Mok; Thanh Pham; Qingzhong Ren; Christine Rimorin; Nadiya Shapovalova; Josef Sulc; Susan M Sunkin; Michael Tieu; Amy Torkelson; Herman Tung; Katelyn Ward; Nick Dee; Kimberly A Smith; Bosiljka Tasic; Hongkui Zeng
Journal:  Cell       Date:  2021-05-17       Impact factor: 66.850

8.  Explainable multiview framework for dissecting spatial relationships from highly multiplexed data.

Authors:  Jovan Tanevski; Ricardo Omar Ramirez Flores; Attila Gabor; Denis Schapiro; Julio Saez-Rodriguez
Journal:  Genome Biol       Date:  2022-04-14       Impact factor: 17.906

Review 9.  Spatial omics and multiplexed imaging to explore cancer biology.

Authors:  Verena C Wimmer; Delphine Merino; Kelly L Rogers; Shalin H Naik; Sabrina M Lewis; Marie-Liesse Asselin-Labat; Quan Nguyen; Jean Berthelet; Xiao Tan
Journal:  Nat Methods       Date:  2021-08-02       Impact factor: 28.547

Review 10.  Basic principles of hydrogel-based tissue transformation technologies and their applications.

Authors:  Seo Woo Choi; Webster Guan; Kwanghun Chung
Journal:  Cell       Date:  2021-08-05       Impact factor: 66.850
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