Literature DB >> 34358468

Basic principles of hydrogel-based tissue transformation technologies and their applications.

Seo Woo Choi1, Webster Guan1, Kwanghun Chung2.   

Abstract

Emerging tissue transformation technologies provide an unprecedented opportunity to investigate system-level molecular and anatomical features in situ. Hydrogel-based methods engineer physicochemical tissue properties to render intact organs optically transparent and size and shape adjustable while preserving biomolecules at their physiological locations. When combined with advanced molecular tools, labeling, and imaging techniques, tissue transformation enables three-dimensional (3D) mapping of molecules, cells, and their interrelationships at increasing speeds and resolutions. In this review, we discuss the basic engineering principles of tissue transformation and labeling techniques as well as their broad applications, current challenges, and future potential.
Copyright © 2021 Elsevier Inc. All rights reserved.

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Year:  2021        PMID: 34358468      PMCID: PMC8372535          DOI: 10.1016/j.cell.2021.07.009

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   66.850


  94 in total

1.  Three-dimensional mapping of brain neuropils in the cockroach, Diploptera punctata.

Authors:  A S Chiang; Y C Liu; S L Chiu; S H Hu; C Y Huang; C H Hsieh
Journal:  J Comp Neurol       Date:  2001-11-05       Impact factor: 3.215

2.  Three-dimensional imaging of the unsectioned adult spinal cord to assess axon regeneration and glial responses after injury.

Authors:  Ali Ertürk; Christoph P Mauch; Farida Hellal; Friedrich Förstner; Tara Keck; Klaus Becker; Nina Jährling; Heinz Steffens; Melanie Richter; Mark Hübener; Edgar Kramer; Frank Kirchhoff; Hans Ulrich Dodt; Frank Bradke
Journal:  Nat Med       Date:  2011-12-25       Impact factor: 53.440

3.  In situ sequencing for RNA analysis in preserved tissue and cells.

Authors:  Rongqin Ke; Marco Mignardi; Alexandra Pacureanu; Jessica Svedlund; Johan Botling; Carolina Wählby; Mats Nilsson
Journal:  Nat Methods       Date:  2013-07-14       Impact factor: 28.547

4.  Method of the Year 2020: spatially resolved transcriptomics.

Authors: 
Journal:  Nat Methods       Date:  2021-01       Impact factor: 28.547

5.  Multiplexed protein maps link subcellular organization to cellular states.

Authors:  Gabriele Gut; Markus D Herrmann; Lucas Pelkmans
Journal:  Science       Date:  2018-08-03       Impact factor: 47.728

6.  ScaleS: an optical clearing palette for biological imaging.

Authors:  Hiroshi Hama; Hiroyuki Hioki; Kana Namiki; Tetsushi Hoshida; Hiroshi Kurokawa; Fumiyoshi Ishidate; Takeshi Kaneko; Takumi Akagi; Takashi Saito; Takaomi Saido; Atsushi Miyawaki
Journal:  Nat Neurosci       Date:  2015-09-14       Impact factor: 24.884

7.  Spatially resolved transcriptomics in neuroscience.

Authors:  Jennie L Close; Brian R Long; Hongkui Zeng
Journal:  Nat Methods       Date:  2021-01       Impact factor: 47.990

8.  Protection of tissue physicochemical properties using polyfunctional crosslinkers.

Authors:  Young-Gyun Park; Chang Ho Sohn; Ritchie Chen; Margaret McCue; Dae Hee Yun; Gabrielle T Drummond; Taeyun Ku; Nicholas B Evans; Hayeon Caitlyn Oak; Wendy Trieu; Heejin Choi; Xin Jin; Varoth Lilascharoen; Ji Wang; Matthias C Truttmann; Helena W Qi; Hidde L Ploegh; Todd R Golub; Shih-Chi Chen; Matthew P Frosch; Heather J Kulik; Byung Kook Lim; Kwanghun Chung
Journal:  Nat Biotechnol       Date:  2018-12-17       Impact factor: 54.908

9.  Dopamine neurons projecting to the posterior striatum form an anatomically distinct subclass.

Authors:  William Menegas; Joseph F Bergan; Sachie K Ogawa; Yoh Isogai; Kannan Umadevi Venkataraju; Pavel Osten; Naoshige Uchida; Mitsuko Watabe-Uchida
Journal:  Elife       Date:  2015-08-31       Impact factor: 8.140

10.  A platform for brain-wide imaging and reconstruction of individual neurons.

Authors:  Michael N Economo; Nathan G Clack; Luke D Lavis; Charles R Gerfen; Karel Svoboda; Eugene W Myers; Jayaram Chandrashekar
Journal:  Elife       Date:  2016-01-20       Impact factor: 8.140

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  8 in total

1.  TISSUE CLEARING.

Authors:  Douglas S Richardson; Webster Guan; Katsuhiko Matsumoto; Chenchen Pan; Kwanghun Chung; Ali Ertürk; Hiroki R Ueda; Jeff W Lichtman
Journal:  Nat Rev Methods Primers       Date:  2021-12-16

Review 2.  Advances in Cellulose-Based Hydrogels for Biomedical Engineering: A Review Summary.

Authors:  Pengfei Zou; Jiaxin Yao; Ya-Nan Cui; Te Zhao; Junwei Che; Meiyan Yang; Zhiping Li; Chunsheng Gao
Journal:  Gels       Date:  2022-06-08

3.  Acrylamide Hydrogel-Modified Silicon Nanowire Field-Effect Transistors for pH Sensing.

Authors:  Gangrong Li; Qianhui Wei; Shuhua Wei; Jing Zhang; Qingxi Jin; Guozhi Wang; Jiawei Hu; Yan Zhu; Yun Kong; Qingzhu Zhang; Hongbin Zhao; Feng Wei; Hailing Tu
Journal:  Nanomaterials (Basel)       Date:  2022-06-16       Impact factor: 5.719

4.  In situ identification of cellular drug targets in mammalian tissue.

Authors:  Zhengyuan Pang; Michael A Schafroth; Daisuke Ogasawara; Yu Wang; Victoria Nudell; Neeraj K Lal; Dong Yang; Kristina Wang; Dylan M Herbst; Jacquelyn Ha; Carlos Guijas; Jacqueline L Blankman; Benjamin F Cravatt; Li Ye
Journal:  Cell       Date:  2022-04-27       Impact factor: 66.850

5.  Epitope-preserving magnified analysis of proteome (eMAP).

Authors:  Joha Park; Sarim Khan; Dae Hee Yun; Taeyun Ku; Katherine L Villa; Jiachen E Lee; Qiangge Zhang; Juhyuk Park; Guoping Feng; Elly Nedivi; Kwanghun Chung
Journal:  Sci Adv       Date:  2021-11-12       Impact factor: 14.957

Review 6.  Polyphenol-based hydrogels: Pyramid evolution from crosslinked structures to biomedical applications and the reverse design.

Authors:  Zimu Li; Zhidong Chen; Hongzhong Chen; Kebing Chen; Wei Tao; Xiao-Kun Ouyang; Lin Mei; Xiaowei Zeng
Journal:  Bioact Mater       Date:  2022-02-01

Review 7.  Functional Hydrogels for Treatment of Chronic Wounds.

Authors:  Ilayda Firlar; Mine Altunbek; Colleen McCarthy; Murugan Ramalingam; Gulden Camci-Unal
Journal:  Gels       Date:  2022-02-17

Review 8.  Towards a Comprehensive Optical Connectome at Single Synapse Resolution via Expansion Microscopy.

Authors:  Madison A Sneve; Kiryl D Piatkevich
Journal:  Front Synaptic Neurosci       Date:  2022-01-18
  8 in total

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