| Literature DB >> 33361533 |
Abstract
Cardiovascular disease (CVD) accounts for approximately 30% of all deaths worldwide and its prevalence is constantly increasing despite advancements in medical treatments. Cardiac remodeling and dysfunction are independent risk factors for CVD. Recent studies have demonstrated that cardiac structure and function are genetically influenced, suggesting that understanding the genetic basis for cardiac structure and function could provide new insights into developing novel therapeutic targets for CVD. Regular exercise has long been considered a robust nontherapeutic method of treating or preventing CVD. However, recent studies also indicate that there is inter-individual variation in response to exercise. Nevertheless, the genetic basis for cardiac structure and function as well as their responses to exercise training have yet to be fully elucidated. Therefore, this review summarizes accumulated evidence supporting the genetic contribution to these traits, including findings from population-based studies and unbiased large genomic-scale studies in humans.Entities:
Keywords: Exercise; Heart; Multifactorial inheritance; Phenotype; Quantitative trait loci
Year: 2021 PMID: 33361533 PMCID: PMC7756535 DOI: 10.4196/kjpp.2021.25.1.1
Source DB: PubMed Journal: Korean J Physiol Pharmacol ISSN: 1226-4512 Impact factor: 2.016
Single nucleotide polymorphism (SNP) significantly associated with cardiac structure
| Trait | Race | Age | Marker | Alleles | Genomic location | Physical location (kb) | SNP type | QTL interval (kb) | Genes | Reference |
|---|---|---|---|---|---|---|---|---|---|---|
| LVM | Caucasian(n = 906) | 60.5 | rs409045 | C/T | 5p13.2 | 34,628 | Intergenic | 34,428–34,828 | [ | |
| rs1833534 | C/G/T | 5q11.2 | 163,393 | Intergenic | 163,193–163,593 | |||||
| rs4129000 | C/T | 12q14.3 | 65,559 | Intronic | 65,359–65,759 | |||||
| rs4129218 | G/A | 12q14.3 | 65,564 | Intronic | 65,364–65,764 | |||||
| rs1155635 | A/C/G | 13q21.33 | 70,373 | Intergenic | 70,173–70,573 | |||||
| African Americans(n = 1,467) | 50.8 | rs238688 | G/A | 20p13 | 3,544 | Intronic | 3,344–3,744 | |||
| rs756529 | G/A | 20q13.13 | 49,394 | Intronic | 49,194–49,594 | |||||
| NS (Dominicans)(n = 1,360) | 46.1 | D12S1042 | G/T | 12p11.23 | 27,539 | Intronic | 27,338–27,738 | SMCO2*, AARNTL2, PPFIBP1, MRPS35 | [ | |
| NS (n = 12,612) | 62.0 | rs17568359 | G/C | 14q12 | 26,168 | Intergenic | 25,968–26,368 | [ | ||
| rs7565161 | A/G | 2p21 | 47,267 | Intronic | 47,067–47,467 | |||||
| rs8031633 | T/C | 15q14 | 37,247 | Intergenic | 37,047–37,447 | |||||
| African Americans (n = 1,258) | 45.3 | rs7774046 | T/C | 6p21.2 | 39,334 | Exonic | 39,134–39,534 | [ | ||
| rs7205297 | G/A | 16q22.2 | 71,991 | Intronic | 71,791–72,191 | |||||
| Caucasian(n = 851) | 43.0 | rs1320448 | A/G | 10q25.1 | 104,086 | Intergenic | 103,886–104,286 | [ | ||
| rs12757165 | A/G | 1q41 | 216,543 | Intronic | 216,334–216,743 | |||||
| rs16830359 | G/A/T | 1p34.2 | 43,130 | Intergenic | 42,930–43,330 | |||||
| rs10947055 | T/C | 6p22.1 | 30,125 | Intergenic | 29,915–30,315 | |||||
| rs1916521 | C/T | 10q21.1 | 55,657 | Intergenic | 55,267–55,857 | |||||
| rs1484170 | T/C | 10q23.1 | 80,939 | Intergenic | 80,739–81,139 | |||||
| rs6995588 | C/T | 8q12.1 | 60,091 | Intergenic | 59,891–60,291 | |||||
| rs4520040 | G/A | 6q16.3 | 103,984 | Intergenic | 103,784–104,184 | |||||
| rs769554 | C/T | 3q13.13 | 109,485 | Intergenic | 109,285–109,685 | |||||
| rs4236016 | C/G/T | 6p22.3 | 22,246 | Intergenic | 22,046–22,446 | |||||
| rs17636733 | T/C | 15q12 | 25,667 | Intergenic | 25,467–25,867 | |||||
| rs1575891 | T/A/C | 13q14.2 | 47,624 | Intergenic | 47,424–47,824 | |||||
| African Americans(n = 6,765) | 51.3 | rs4552931 | A/G | 8q11.21 | 48,258 | Intergenic | 48,058–48,458 | [ | ||
| NS (n = 44,203) | 62.7 | rs1454157 | C/T | 4q34.2 | 176,437 | Intergenic | 176,237–176,637 | [ | ||
| NS (Dominicans)(n = 180) | 46.2 | rs1046116 | G/A | 12p11.21 | 32,868 | Exonic | 32,668–33,068 | [ | ||
| rs1035607 | A/C/T | 12p11.22 | 29,356 | Intronic | 29,156–29,556 | |||||
| rs11168459 | G/A | 12q13.11 | 48,202 | Exonic | 48,002–48,402 | |||||
| rs2191162 | A/G | 12q13.11 | 46,803 | Intronic | 46,663–47,003 | |||||
| rs731236 | G/A | 12q13.11 | 47,844 | Exonic | 47,644–48,044 | |||||
| rs74081827 | A/G | 12q12 | 45,439 | Exonic | 45,239–45,639 | |||||
| rs35989439 | T/A | 12p11.21 | 30,992 | Exonic | 30,792–31,192 | |||||
| rs11168985 | A/C | 12q12 | 38,652 | Intergenic | 38,452–38,852 | |||||
| rs7311790 | A/G | 12q13.11 | 47,667 | Intronic | 47,467–47,867 | |||||
| NS (European)(n = 16,920) | 62.5 | rs2255167 | T/A | 2q31.2 | 178,693 | Intronic | 178,493–178,893 | TTN, CCDC141, TTN-AS1 | [ | |
| LVDD | NS (n = 16,706) | 61.0 | rs89107 | A/G | 6q22.31 | 118,256 | Intronic | 118,056–118,456 | SLC35F1 | [ |
| rs11153768 | C/T | 6q22.31 | 118,666 | Intronic | 118,466–118,866 | CEP85L, BRD7P3, MCM9, PLN, SELENOKP3 | ||||
| African Americans(n = 5,555) | 51.3 | rs2700294 | G/A/C | 7p15.3 | 21,318 | Intergenic | 21,118–21,518 | DNAH11, SP4 | [ | |
| rs7213314 | C/T | 17q24.2 | 68,689 | Intergenic | 68,489–68,889 | ABCA8, FAM20A, PRKAR1A, WIPI1, LINC01482 | ||||
| NS (n = 44,203) | 62.7 | rs11153730 | C/T | 6q22.31 | 118,346 | Intergenic | 118,146–118,546 | SLC35F1, BRD7P3, CEP85L | [ | |
| rs12541595 | G/T | 8q24.13 | 124,844 | Intergenic | 124,644–125,044 | MTSS1, SQLE, WASHC5, ZNF572 | ||||
| rs10774625 | A/G | 12q24.12 | 111,472 | Intronic | 111,272–111,672 | ATXN2, BRAP, CUX2, FAM109A, PHETA1, SH2B3 | ||||
| East Asian(n = 19,676) | 66.7 | rs34866937 | G/A | 8q24.13 | 124,847 | Intergenic | 124,647–125,047 | MIR4662B, LINC00964, MTSS1, SQLE, WASHC5, ZNF572 | [ | |
| rs3812625 | A/G | 10q22.2 | 73,997 | Intergenic | 73,797–74,197 | VCL, ADK, AP3M1, C10orf55, CAMK2G, NDST2, PLAU, ZSWIM8 | ||||
| rs11874741 | G/A | 18q12.1 | 32,497 | Intergenic | 32,297–32,697 | GAREM1, WBP11P1, KLHL14 | ||||
| LVWT | Caucasian and African Americans (n = 3,611) | 51.7 | rs1436109 | G/T | 11q23.2 | 113,120 | Intronic | 112,920–113,320 | NCAM1, TTC12 | [ |
| NS (n = 16,706) | 61.5 | rs7910620 | C/G/T | 10q23.1 | 86,087 | Intronic | 85,887–86,287 | GRID1 | [ | |
| rs2059238 | A/C/T | 16q23.1 | 78,224 | Intronic | 78,024–78,424 | WWOX, CLEC3A | ||||
| rs17132261 | C/T | 5q21.1 | 110,672 | Intronic | 110,472–110,872 | TMEM232 | ||||
| IVWT | African Americans(n = 1,258) | 45.3 | rs16855517 | G/A | 2q24.3 | 168,571 | Intronic | 168,371–168,771 | CERS6 | [ |
| rs7836010 | G/C | 8q24.11 | 117,849 | Intronic | 117,649–118,049 | EXT1 | ||||
| African Americans(n = 5,555) | 51.3 | rs1571099 | C/T | 10q26.12 | 120,507 | Intronic | 120,307–120,707 | PLPP4, RPL21 | [ | |
| LVEDV | NS (European)(n = 16,920) | 62.5 | rs2042995 | T/C | 2q31.2 | 178,694 | Exonic | 178,494–178–894 | KCNMB2 | [ |
| rs7071853 | T/C | 10q26.11 | 119,552 | Intergenic | 119,352–119,752 | RGS10 | ||||
| rs7310615 | C/G | 12q24.12 | 111,427 | Intronic | 111,227–111,627 | ATXN2 | ||||
| LVESV | NS (European)(n = 16,920) | 62.5 | rs2042995 | T/C | 2q31.2 | 178,694 | Exonic | 178,494–178,894 | TTN, CCDC141 | [ |
| rs200712209 | A/T | 8q24.13 | 124,846 | Intronic | 124,646–125,046 | |||||
| rs72840788 | G/A | 10q26.11 | 119,656 | Intronic | 119,456–119,856 | |||||
Each significant locus was re-evaluated by the authors using the latest version of UCSC Genome Browser (Human GRCh38/hg38). QTL interval was set at ±200 kb centered around each SNP and genes in the QTL interval were identified using the UCSC Genome Browser. The significant level for linkages or associations varies by studies and if not specified, a significant p-value of 1.00E-5 was used. LVM, left ventricular mass; LVDD, left ventricular diastolic dimension; LVWT, left ventricular wall thickness; IVWT, inter-ventricular septal wall thickness; LVEDV, LVED volume; LVESV, LVES volume; NS, non-specified. Bold font indicates genes reported in previous studies as the nearest genes. Plain text genes with no symbol are additionally identified in the QTL interval. *Genes newly identified as the nearest gene in the QTL interval.
Single nucleotide polymorphism (SNP) significantly associated with cardiac function
| Trait | Race | Age | Marker | Allele | Genomic location | Physical location (kb) | SNP type | QTL interval (kb) | Genes | Reference |
|---|---|---|---|---|---|---|---|---|---|---|
| SV | Caucasian(n = 475) | 39.1 | D14S53 | - | 14q31.1 | 76,922 | - | 76,722–77,122 | ANGEL1, CIPC, IRF2BPL, LINC01629, LINC02288, LINC02289, LRRC74A, VASH1, VASH1-AS1 | [ |
| CO | African American(n = 272) | 37.9 | D18S866 | - | 18q11.2 | 21,624 | Intronic | 21,424–21,824 | ABHD3, ESCO1, GREB1L, MIB1, SNRPD1 | |
| EF | African Americans(n = 6,765) | 51.3 | rs9530176 | T/A | 13q22.1 | 73,244 | Intergenic | 73,044–73,444 | [ | |
| rs16991189 | T/C/G | 20p12.3 | 5,717 | Intergenic | 5,517–5,917 | |||||
| rs2404490 | C/A/T | 20p11.21 | 22,718 | Intergenic | 22,518–22,918 | |||||
| East Asian(n = 19.676) | 66.7 | rs6546120 | G/A/T | 2p14 | 65,011 | Intronic | 64,811–65,211 | [ | ||
| rs34866937 | G/A | 8q24.13 | 124,847 | Intergenic | 124,647–125,047 | |||||
| rs5760061 | G/A | 22q11.23 | 23,835 | Exonic | 23,635–24,035 | |||||
| NS (European)(n = 16,920) | 62.5 | rs945425 | T/A/C | 1p36.13 | 16,021 | Intergenic | 15,821–16,221 | [ | ||
| rs2042995 | T/C | 2q31.2 | 178,693 | Exonic | 178,493–178,893 | |||||
| rs34866937 | G/A | 8q24.13 | 124,847 | Intergenic | 124,647–125,047 | |||||
| rs72840788 | G/A | 10q26.11 | 119,655 | Intronic | 119,455–119,855 | |||||
| FS | NS (n = 44,203) | 62.7 | rs9470361 | G/A/T | 6p21.2 | 36,655 | Intergenic | 36,455–36,855 | [ | |
| East Asian(n = 19,676) | 66.7 | rs6546120 | G/A/T | 2p14 | 65,011 | Intronic | 64,811–65,211 | [ | ||
| rs34866937 | G/A | 8q24.13 | 124,847 | Intergenic | 124,647–125,047 | |||||
| rs11025521 | T/G | 11p15.1 | 20,348 | Intergenic | 20,138–20,548 | |||||
| rs5760054 | C/T | 22q11.23 | 23,819 | Intronic | 23,619–24,019 |
Each significant locus was re-evaluated by the authors using the latest version of UCSC Genome Browser (Human GRCh38/hg38). QTL interval was set at ±200 kb centered around each SNP. Genes in the QTL interval were identified using the UCSC Genome Browser. The significant level for linkages or associations varies by studies and if not specified, a significant p-value of 1.00E-5 was used. SV, stroke volume measured during exercising at 50W; CO, cardiac output measured during exercising at 50W; EF, ejection fraction; FS, fractional shortening; NS, non-specified. Bold font indicates genes reported in previous studies as the nearest genes. Plain text genes with no symbol are additionally identified in the QTL interval. *Genes newly identified as the nearest gene in the QTL interval.
Single nucleotide polymorphism (SNP) significantly associated with cardiac responses to exercise training
| Trait | Race | Age (mean, y) | Marker | Allele | Genomic location | Physical location (kb) | SNP type | QTL interval (kb) | Genes | Reference |
|---|---|---|---|---|---|---|---|---|---|---|
| ΔSV | Caucasian(n = 475) | 39.1 | D10S1666 | - | 10p11.2 | 33,692 | Intergenic | 33,492–33,892 | LINC00838, RPL23P11 | [ |
| Caucasian and African American(n = 701) | 38.5 | D2S324 | - | 2q31.2 | 179,656 | Intronic | 179,456–180,056 | [ | ||
| D2S385 | - | 2q31.2 | 179,625 | Intronic | 179,425–180,025 | |||||
| D2S148 | - | 2q31.2 | 178,231 | Intronic | 178,031–178,431 | CHROMR, OSBPL6, PDE11A, PRKRA, RBM45 | ||||
| Caucasian(n = 450) | 39.1 | rs398686 | C/T | 10p11.22 | 32,032 | Intronic | 31,832–32,232 | [ | ||
| rs172431 | G/A | 10p11.22 | 32,037 | Intronic | 31,837–32,237 | |||||
| rs211286 | G/A | 10p11.22 | 32,046 | Intronic | 31,846–32,246 | |||||
| rs211302 | C/G | 10p11.22 | 32,056 | Intergenic | 31,856–32,226 | |||||
| ΔCO | Caucasian and African American(n = 701) | 38.5 | D2S148 | - | 2q31.2 | 178,231 | Intronic | 178,031–178,431 | CHROMR, OSBPL6, PDE11A, PRKRA, RBM45 | [ |
Each significant locus was re-evaluated by the authors using the latest version of UCSC Genome Browser (Human GRCh38/hg38). QTL interval was set at ±200 kb centered around each SNP and genes in the QTL interval were identified using the UCSC Genome Browser. ΔSV, changes in stroke volume by exercise training; ΔCO, changes in cardiac output by exercise training. Bold font indicates genes reported in previous studies as the nearest genes. Plain text genes are additionally identified in the QTL interval.