Literature DB >> 33282511

Multi-resolution open-top light-sheet microscopy to enable efficient 3D pathology workflows.

Lindsey A Barner1,2, Adam K Glaser1, Hongyi Huang3, Lawrence D True3, Jonathan T C Liu1,3,4,5.   

Abstract

Open-top light-sheet (OTLS) microscopes have been developed for user-friendly and versatile high-throughput 3D microscopy of thick specimens. As with all imaging modalities, spatial resolution trades off with imaging and analysis times. A hierarchical multi-scale imaging workflow would therefore be of value for many volumetric microscopy applications. We describe a compact multi-resolution OTLS microscope, enabled by a novel solid immersion meniscus lens (SIMlens), which allows users to rapidly transition between air-based objectives for low- and high-resolution 3D imaging. We demonstrate the utility of this system by showcasing an efficient 3D analysis workflow for a diagnostic pathology application.
© 2020 Optical Society of America under the terms of the OSA Open Access Publishing Agreement.

Year:  2020        PMID: 33282511      PMCID: PMC7687944          DOI: 10.1364/BOE.408684

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  37 in total

1.  Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy.

Authors:  Raju Tomer; Khaled Khairy; Fernando Amat; Philipp J Keller
Journal:  Nat Methods       Date:  2012-06-03       Impact factor: 28.547

2.  Accuracy is in the eyes of the pathologist: The visual interpretive process and diagnostic accuracy with digital whole slide images.

Authors:  Tad T Brunyé; Ezgi Mercan; Donald L Weaver; Joann G Elmore
Journal:  J Biomed Inform       Date:  2017-01-10       Impact factor: 6.317

Review 3.  Histopathological image analysis: a review.

Authors:  Metin N Gurcan; Laura E Boucheron; Ali Can; Anant Madabhushi; Nasir M Rajpoot; B Yener
Journal:  IEEE Rev Biomed Eng       Date:  2009-10-30

Review 4.  Prostate cancer: diagnostic criteria and role of immunohistochemistry.

Authors:  Cristina Magi-Galluzzi
Journal:  Mod Pathol       Date:  2018-01       Impact factor: 7.842

5.  Solid immersion meniscus lens (SIMlens) for open-top light-sheet microscopy.

Authors:  Lindsey A Barner; Adam K Glaser; Lawrence D True; Nicholas P Reder; Jonathan T C Liu
Journal:  Opt Lett       Date:  2019-09-15       Impact factor: 3.776

6.  Diagnosis of "Poorly Formed Glands" Gleason Pattern 4 Prostatic Adenocarcinoma on Needle Biopsy: An Interobserver Reproducibility Study Among Urologic Pathologists With Recommendations.

Authors:  Ming Zhou; Jianbo Li; Liang Cheng; Lars Egevad; Fang-Ming Deng; Lakshmi Priya Kunju; Cristina Magi-Galluzzi; Jonathan Melamed; Rohit Mehra; Savvas Mendrinos; Adeboye O Osunkoya; Gladell Paner; Steve S Shen; Toyonori Tsuzuki; Kiril Trpkov; Wei Tian; Ximing Yang; Rajal B Shah
Journal:  Am J Surg Pathol       Date:  2015-10       Impact factor: 6.394

7.  Inverted light-sheet microscope for imaging mouse pre-implantation development.

Authors:  Petr Strnad; Stefan Gunther; Judith Reichmann; Uros Krzic; Balint Balazs; Gustavo de Medeiros; Nils Norlin; Takashi Hiiragi; Lars Hufnagel; Jan Ellenberg
Journal:  Nat Methods       Date:  2015-12-14       Impact factor: 28.547

8.  Physical basis of the 'magnification rule' for standardized Immunohistochemical scoring of HER2 in breast and gastric cancer.

Authors:  Andreas H Scheel; Frédérique Penault-Llorca; Wedad Hanna; Gustavo Baretton; Peter Middel; Judith Burchhardt; Manfred Hofmann; Bharat Jasani; Josef Rüschoff
Journal:  Diagn Pathol       Date:  2018-03-12       Impact factor: 2.644

9.  Structural and molecular interrogation of intact biological systems.

Authors:  Kwanghun Chung; Jenelle Wallace; Sung-Yon Kim; Sandhiya Kalyanasundaram; Aaron S Andalman; Thomas J Davidson; Julie J Mirzabekov; Kelly A Zalocusky; Joanna Mattis; Aleksandra K Denisin; Sally Pak; Hannah Bernstein; Charu Ramakrishnan; Logan Grosenick; Viviana Gradinaru; Karl Deisseroth
Journal:  Nature       Date:  2013-04-10       Impact factor: 49.962

10.  Light-sheet microscopy of cleared tissues with isotropic, subcellular resolution.

Authors:  Tonmoy Chakraborty; Meghan K Driscoll; Elise Jeffery; Malea M Murphy; Philippe Roudot; Bo-Jui Chang; Saumya Vora; Wen Mai Wong; Cara D Nielson; Hua Zhang; Vladimir Zhemkov; Chitkale Hiremath; Estanislao Daniel De La Cruz; Yating Yi; Ilya Bezprozvanny; Hu Zhao; Raju Tomer; Rainer Heintzmann; Julian P Meeks; Denise K Marciano; Sean J Morrison; Gaudenz Danuser; Kevin M Dean; Reto Fiolka
Journal:  Nat Methods       Date:  2019-10-31       Impact factor: 28.547

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  7 in total

1.  Single-objective high-resolution confocal light sheet fluorescence microscopy for standard biological sample geometries.

Authors:  Stoyan Yordanov; Konstantin Neuhaus; Raimo Hartmann; Francisco Díaz-Pascual; Lucia Vidakovic; Praveen K Singh; Knut Drescher
Journal:  Biomed Opt Express       Date:  2021-05-14       Impact factor: 3.732

2.  High-speed light-sheet microscopy for the in-situ acquisition of volumetric histological images of living tissue.

Authors:  Kripa B Patel; Wenxuan Liang; Malte J Casper; Venkatakaushik Voleti; Wenze Li; Alexis J Yagielski; Hanzhi T Zhao; Citlali Perez Campos; Grace Sooyeon Lee; Joyce M Liu; Elizabeth Philipone; Angela J Yoon; Kenneth P Olive; Shana M Coley; Elizabeth M C Hillman
Journal:  Nat Biomed Eng       Date:  2022-03-28       Impact factor: 25.671

3.  A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues.

Authors:  Adam K Glaser; Kevin W Bishop; Lindsey A Barner; Etsuo A Susaki; Shimpei I Kubota; Gan Gao; Robert B Serafin; Pooja Balaram; Emily Turschak; Philip R Nicovich; Hoyin Lai; Luciano A G Lucas; Yating Yi; Eva K Nichols; Hongyi Huang; Nicholas P Reder; Jasmine J Wilson; Ramya Sivakumar; Elya Shamskhou; Caleb R Stoltzfus; Xing Wei; Andrew K Hempton; Marko Pende; Prayag Murawala; Hans-Ulrich Dodt; Takato Imaizumi; Jay Shendure; Brian J Beliveau; Michael Y Gerner; Li Xin; Hu Zhao; Lawrence D True; R Clay Reid; Jayaram Chandrashekar; Hiroki R Ueda; Karel Svoboda; Jonathan T C Liu
Journal:  Nat Methods       Date:  2022-05-11       Impact factor: 47.990

4.  Prostate Cancer Risk Stratification via Nondestructive 3D Pathology with Deep Learning-Assisted Gland Analysis.

Authors:  Weisi Xie; Nicholas P Reder; Can Koyuncu; Patrick Leo; Sarah Hawley; Hongyi Huang; Chenyi Mao; Nadia Postupna; Soyoung Kang; Robert Serafin; Gan Gao; Qinghua Han; Kevin W Bishop; Lindsey A Barner; Pingfu Fu; Jonathan L Wright; C Dirk Keene; Joshua C Vaughan; Andrew Janowczyk; Adam K Glaser; Anant Madabhushi; Lawrence D True; Jonathan T C Liu
Journal:  Cancer Res       Date:  2021-12-01       Impact factor: 13.312

Review 5.  Harnessing non-destructive 3D pathology.

Authors:  Jonathan T C Liu; Adam K Glaser; Kaustav Bera; Lawrence D True; Nicholas P Reder; Kevin W Eliceiri; Anant Madabhushi
Journal:  Nat Biomed Eng       Date:  2021-02-15       Impact factor: 25.671

6.  Multiresolution nondestructive 3D pathology of whole lymph nodes for breast cancer staging.

Authors:  Lindsey A Barner; Adam K Glaser; Chenyi Mao; Etsuo A Susaki; Joshua C Vaughan; Suzanne M Dintzis; Jonathan T C Liu
Journal:  J Biomed Opt       Date:  2022-03       Impact factor: 3.758

7.  Microdissected "cuboids" for microfluidic drug testing of intact tissues.

Authors:  Lisa F Horowitz; Adan D Rodriguez; Allan Au-Yeung; Kevin W Bishop; Lindsey A Barner; Gargi Mishra; Aashik Raman; Priscilla Delgado; Jonathan T C Liu; Taranjit S Gujral; Mehdi Mehrabi; Mengsu Yang; Robert H Pierce; Albert Folch
Journal:  Lab Chip       Date:  2021-01-05       Impact factor: 6.799

  7 in total

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