Literature DB >> 35545715

A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues.

Adam K Glaser1,2, Kevin W Bishop3,4, Lindsey A Barner3, Etsuo A Susaki5,6, Shimpei I Kubota7,8, Gan Gao3, Robert B Serafin3, Pooja Balaram9, Emily Turschak9, Philip R Nicovich10, Hoyin Lai11, Luciano A G Lucas11, Yating Yi12, Eva K Nichols13, Hongyi Huang3, Nicholas P Reder3,14, Jasmine J Wilson15, Ramya Sivakumar15, Elya Shamskhou15, Caleb R Stoltzfus15, Xing Wei16, Andrew K Hempton17, Marko Pende18, Prayag Murawala18,19, Hans-Ulrich Dodt20,21, Takato Imaizumi17, Jay Shendure13,22,23,24, Brian J Beliveau13,24, Michael Y Gerner15, Li Xin16, Hu Zhao12, Lawrence D True14, R Clay Reid9, Jayaram Chandrashekar25,26, Hiroki R Ueda6,27, Karel Svoboda25, Jonathan T C Liu28,29,30.   

Abstract

Light-sheet microscopy has emerged as the preferred means for high-throughput volumetric imaging of cleared tissues. However, there is a need for a flexible system that can address imaging applications with varied requirements in terms of resolution, sample size, tissue-clearing protocol, and transparent sample-holder material. Here, we present a 'hybrid' system that combines a unique non-orthogonal dual-objective and conventional (orthogonal) open-top light-sheet (OTLS) architecture for versatile multi-scale volumetric imaging. We demonstrate efficient screening and targeted sub-micrometer imaging of sparse axons within an intact, cleared mouse brain. The same system enables high-throughput automated imaging of multiple specimens, as spotlighted by a quantitative multi-scale analysis of brain metastases. Compared with existing academic and commercial light-sheet microscopy systems, our hybrid OTLS system provides a unique combination of versatility and performance necessary to satisfy the diverse requirements of a growing number of cleared-tissue imaging applications.
© 2022. The Author(s), under exclusive licence to Springer Nature America, Inc.

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Year:  2022        PMID: 35545715      PMCID: PMC9214839          DOI: 10.1038/s41592-022-01468-5

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   47.990


  50 in total

1.  Chemical Landscape for Tissue Clearing Based on Hydrophilic Reagents.

Authors:  Kazuki Tainaka; Tatsuya C Murakami; Etsuo A Susaki; Chika Shimizu; Rie Saito; Kei Takahashi; Akiko Hayashi-Takagi; Hiroshi Sekiya; Yasunobu Arima; Satoshi Nojima; Masako Ikemura; Tetsuo Ushiku; Yoshihiro Shimizu; Masaaki Murakami; Kenji F Tanaka; Masamitsu Iino; Haruo Kasai; Toshikuni Sasaoka; Kazuto Kobayashi; Kohei Miyazono; Eiichi Morii; Tadashi Isa; Masashi Fukayama; Akiyoshi Kakita; Hiroki R Ueda
Journal:  Cell Rep       Date:  2018-08-21       Impact factor: 9.423

2.  Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination.

Authors:  Thomas A Planchon; Liang Gao; Daniel E Milkie; Michael W Davidson; James A Galbraith; Catherine G Galbraith; Eric Betzig
Journal:  Nat Methods       Date:  2011-03-04       Impact factor: 28.547

3.  Solid immersion meniscus lens (SIMlens) for open-top light-sheet microscopy.

Authors:  Lindsey A Barner; Adam K Glaser; Lawrence D True; Nicholas P Reder; Jonathan T C Liu
Journal:  Opt Lett       Date:  2019-09-15       Impact factor: 3.776

4.  Whole-tissue biopsy phenotyping of three-dimensional tumours reveals patterns of cancer heterogeneity.

Authors:  Nobuyuki Tanaka; Shigeaki Kanatani; Raju Tomer; Cecilia Sahlgren; Pauliina Kronqvist; Dagmara Kaczynska; Lauri Louhivuori; Lorand Kis; Claes Lindh; Przemysław Mitura; Andrzej Stepulak; Sara Corvigno; Johan Hartman; Patrick Micke; Artur Mezheyeuski; Carina Strell; Joseph W Carlson; Carlos Fernández Moro; Hanna Dahlstrand; Arne Östman; Kazuhiro Matsumoto; Peter Wiklund; Mototsugu Oya; Ayako Miyakawa; Karl Deisseroth; Per Uhlén
Journal:  Nat Biomed Eng       Date:  2017-10-02       Impact factor: 25.671

5.  Reconstruction of 1,000 Projection Neurons Reveals New Cell Types and Organization of Long-Range Connectivity in the Mouse Brain.

Authors:  Johan Winnubst; Erhan Bas; Tiago A Ferreira; Zhuhao Wu; Michael N Economo; Patrick Edson; Ben J Arthur; Christopher Bruns; Konrad Rokicki; David Schauder; Donald J Olbris; Sean D Murphy; David G Ackerman; Cameron Arshadi; Perry Baldwin; Regina Blake; Ahmad Elsayed; Mashtura Hasan; Daniel Ramirez; Bruno Dos Santos; Monet Weldon; Amina Zafar; Joshua T Dudman; Charles R Gerfen; Adam W Hantman; Wyatt Korff; Scott M Sternson; Nelson Spruston; Karel Svoboda; Jayaram Chandrashekar
Journal:  Cell       Date:  2019-09-05       Impact factor: 41.582

6.  Epigenetic remodelling shapes inflammatory renal cancer and neutrophil-dependent metastasis.

Authors:  Jun Nishida; Yusaku Momoi; Kosuke Miyakuni; Yusuke Tamura; Kei Takahashi; Daizo Koinuma; Kohei Miyazono; Shogo Ehata
Journal:  Nat Cell Biol       Date:  2020-03-23       Impact factor: 28.824

7.  Tissue clearing of both hard and soft tissue organs with the PEGASOS method.

Authors:  Dian Jing; Shiwen Zhang; Wenjing Luo; Xiaofei Gao; Yi Men; Chi Ma; Xiaohua Liu; Yating Yi; Abhijit Bugde; Bo O Zhou; Zhihe Zhao; Quan Yuan; Jian Q Feng; Liang Gao; Woo-Ping Ge; Hu Zhao
Journal:  Cell Res       Date:  2018-05-29       Impact factor: 25.617

8.  Epi-illumination SPIM for volumetric imaging with high spatial-temporal resolution.

Authors:  Bin Yang; Xingye Chen; Yina Wang; Siyu Feng; Veronica Pessino; Nico Stuurman; Nathan H Cho; Karen W Cheng; Samuel J Lord; Linfeng Xu; Dan Xie; R Dyche Mullins; Manuel D Leonetti; Bo Huang
Journal:  Nat Methods       Date:  2019-05-06       Impact factor: 28.547

9.  Versatile whole-organ/body staining and imaging based on electrolyte-gel properties of biological tissues.

Authors:  Etsuo A Susaki; Chika Shimizu; Akihiro Kuno; Kazuki Tainaka; Xiang Li; Kengo Nishi; Ken Morishima; Hiroaki Ono; Koji L Ode; Yuki Saeki; Kazunari Miyamichi; Kaoru Isa; Chihiro Yokoyama; Hiroki Kitaura; Masako Ikemura; Tetsuo Ushiku; Yoshihiro Shimizu; Takashi Saito; Takaomi C Saido; Masashi Fukayama; Hirotaka Onoe; Kazushige Touhara; Tadashi Isa; Akiyoshi Kakita; Mitsuhiro Shibayama; Hiroki R Ueda
Journal:  Nat Commun       Date:  2020-04-27       Impact factor: 14.919

10.  A versatile oblique plane microscope for large-scale and high-resolution imaging of subcellular dynamics.

Authors:  Etai Sapoznik; Bo-Jui Chang; Jaewon Huh; Robert J Ju; Evgenia V Azarova; Theresa Pohlkamp; Erik S Welf; David Broadbent; Alexandre F Carisey; Samantha J Stehbens; Kyung-Min Lee; Arnaldo Marín; Ariella B Hanker; Jens C Schmidt; Carlos L Arteaga; Bin Yang; Yoshihiko Kobayashi; Purushothama Rao Tata; Rory Kruithoff; Konstantin Doubrovinski; Douglas P Shepherd; Alfred Millett-Sikking; Andrew G York; Kevin M Dean; Reto P Fiolka
Journal:  Elife       Date:  2020-11-12       Impact factor: 8.140

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  2 in total

1.  High-speed mosaic imaging using scanner-synchronized stage position sampling.

Authors:  Chi Huang; Vincent Ching-Roa; Yihan Liu; Michael G Giacomelli
Journal:  J Biomed Opt       Date:  2022-01       Impact factor: 3.758

2.  Multiresolution nondestructive 3D pathology of whole lymph nodes for breast cancer staging.

Authors:  Lindsey A Barner; Adam K Glaser; Chenyi Mao; Etsuo A Susaki; Joshua C Vaughan; Suzanne M Dintzis; Jonathan T C Liu
Journal:  J Biomed Opt       Date:  2022-03       Impact factor: 3.758

  2 in total

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