Literature DB >> 33255443

A Rapid Colorimetric Assay for On-Site Authentication of Cephalopod Species.

Giuseppina Tatulli1, Paola Cecere1, Davide Maggioni2,3, Andrea Galimberti4, Pier Paolo Pompa1.   

Abstract

A colorimetric assay, exploiting the combination of loop-mediated isothermal amplification (LAMP) with DNA barcoding, was developed to address the authentication of some cephalopod species, a relevant group in the context of seafood traceability, due to the intensive processing from the fishing sites to the shelf. The discriminating strategy relies on accurate design of species-specific LAMP primers within the conventional 5' end of the mitochondrial COI DNA barcode region and allows for the identification of Loligo vulgaris among two closely related and less valuable species. The assay, coupled to rapid genomic DNA extraction, is suitable for large-scale screenings and on-site applications due to its easy procedures, with fast (30 min) and visual readout.

Entities:  

Keywords:  LAMP; cephalopod species; colorimetric test; food authentication; genetic traceability; on-site test

Mesh:

Substances:

Year:  2020        PMID: 33255443      PMCID: PMC7760856          DOI: 10.3390/bios10120190

Source DB:  PubMed          Journal:  Biosensors (Basel)        ISSN: 2079-6374


  25 in total

1.  Rapid detection and differentiation of dengue virus serotypes by a real-time reverse transcription-loop-mediated isothermal amplification assay.

Authors:  Manmohan Parida; Kouhei Horioke; Hiroyuki Ishida; Paban Kumar Dash; Parag Saxena; Asha Mukul Jana; Mohammed Alimul Islam; Shingo Inoue; Norimitsu Hosaka; Kouichi Morita
Journal:  J Clin Microbiol       Date:  2005-06       Impact factor: 5.948

2.  Operational feasibility of using loop-mediated isothermal amplification for diagnosis of pulmonary tuberculosis in microscopy centers of developing countries.

Authors:  Catharina C Boehme; Pamela Nabeta; German Henostroza; Rubhana Raqib; Zeaur Rahim; Martina Gerhardt; Erica Sanga; Michael Hoelscher; Tsugunori Notomi; Tetsu Hase; Mark D Perkins
Journal:  J Clin Microbiol       Date:  2007-03-28       Impact factor: 5.948

3.  Potential use of DNA barcodes in regulatory science: applications of the Regulatory Fish Encyclopedia.

Authors:  Haile F Yancy; Tyler S Zemlak; Jacquline A Mason; Jewell D Washington; Bradley J Tenge; Ngoc-Lan T Nguyen; James D Barnett; Warren E Savary; Walter E Hill; Michelle M Moore; Frederick S Fry; Spring C Randolph; Patricia L Rogers; Paul D N Hebert
Journal:  J Food Prot       Date:  2008-01       Impact factor: 2.077

4.  Visual detection of isothermal nucleic acid amplification using pH-sensitive dyes.

Authors:  Nathan A Tanner; Yinhua Zhang; Thomas C Evans
Journal:  Biotechniques       Date:  2015-02-01       Impact factor: 1.993

5.  DNA Barcoding Meets Nanotechnology: Development of a Universal Colorimetric Test for Food Authentication.

Authors:  Paola Valentini; Andrea Galimberti; Valerio Mezzasalma; Fabrizio De Mattia; Maurizio Casiraghi; Massimo Labra; Pier Paolo Pompa
Journal:  Angew Chem Int Ed Engl       Date:  2017-06-12       Impact factor: 15.336

6.  Protocol for building a reference standard sequence library for DNA-based seafood identification.

Authors:  Jonathan R Deeds; Sara M Handy; Frederick Fry; Hudson Granade; Jeffrey T Williams; Monica Powers; Robert Shipp; Lee A Weigt
Journal:  J AOAC Int       Date:  2014 Nov-Dec       Impact factor: 1.913

7.  Development of a real-time loop-mediated isothermal amplification (LAMP) assay and visual LAMP assay for detection of African swine fever virus (ASFV).

Authors:  Deguo Wang; Jianghan Yu; Yongzhen Wang; Meng Zhang; Peng Li; Meng Liu; Yanhong Liu
Journal:  J Virol Methods       Date:  2019-11-11       Impact factor: 2.014

8.  Loop-mediated isothermal amplification (LAMP)-based method for rapid mushroom species identification.

Authors:  Franziska Vaagt; Ilka Haase; Markus Fischer
Journal:  J Agric Food Chem       Date:  2013-02-12       Impact factor: 5.279

9.  Colorimetric detection of loop-mediated isothermal amplification reaction by using hydroxy naphthol blue.

Authors:  Motoki Goto; Eiichi Honda; Atsuo Ogura; Akio Nomoto; Ken-Ichi Hanaki
Journal:  Biotechniques       Date:  2009-03       Impact factor: 1.993

10.  A Real-Time PCR Method for the Authentication of Common Cuttlefish (Sepia officinalis) in Food Products.

Authors:  Amaya Velasco; Graciela Ramilo-Fernández; Carmen G Sotelo
Journal:  Foods       Date:  2020-03-04
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  2 in total

1.  Phylogeography of the veined squid, Loligo forbesii, in European waters.

Authors:  Anika Göpel; Daniel Oesterwind; Christopher Barrett; Rita Cannas; Luis Silva Caparro; Pierluigi Carbonara; Marilena Donnaloia; Maria Cristina Follesa; Angela Larivain; Vladimir Laptikhovsky; Evgenia Lefkaditou; Jean-Paul Robin; Maria Begoña Santos; Ignacio Sobrino; Julio Valeiras; Maria Valls; Hugo C Vieira; Kai Wieland; Ralf Bastrop
Journal:  Sci Rep       Date:  2022-05-12       Impact factor: 4.996

2.  Colorimetric Point-of-Care Detection of Clostridium tyrobutyricum Spores in Milk Samples.

Authors:  Paola Cecere; Francesca Gatto; Claudia Cortimiglia; Daniela Bassi; Franco Lucchini; Pier Sandro Cocconcelli; Pier Paolo Pompa
Journal:  Biosensors (Basel)       Date:  2021-08-24
  2 in total

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