Literature DB >> 25230794

Protocol for building a reference standard sequence library for DNA-based seafood identification.

Jonathan R Deeds, Sara M Handy, Frederick Fry, Hudson Granade, Jeffrey T Williams, Monica Powers, Robert Shipp, Lee A Weigt.   

Abstract

With the recent adoption of a DNA sequencing-based method for the species identification for seafood products by the U.S. Food and Drug Administration (FDA), a library of standard sequences derived from reference specimens with authoritative taxonomic authentication was required. Provided here are details of how the FDA and its collaborators are building this reference standard sequence library that will be used to confirm the accurate labeling of seafood products sold in interstate commerce in the United States. As an example data set from this library, information for 117 fish reference standards, representing 94 species from 43 families in 15 orders, collected over a 4-year period from the Gulf of Mexico, U.S., that are now stored at the Smithsonian Museum Support Center in Suitland, MD, are provided.

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Year:  2014        PMID: 25230794     DOI: 10.5740/jaoacint.14-111

Source DB:  PubMed          Journal:  J AOAC Int        ISSN: 1060-3271            Impact factor:   1.913


  6 in total

1.  Evaluation of variation within the barcode region of Cytochrome c Oxidase I (COI) for the detection of commercial Callinectes sapidus Rathbun, 1896 (blue crab) products of non-US origin.

Authors:  Amanda M Windsor; M Katherine Moore; Kimberly A Warner; Sarah R Stadig; Jonathan R Deeds
Journal:  PeerJ       Date:  2019-11-05       Impact factor: 2.984

Review 2.  An Updated Review of Ciguatera Fish Poisoning: Clinical, Epidemiological, Environmental, and Public Health Management.

Authors:  Melissa A Friedman; Mercedes Fernandez; Lorraine C Backer; Robert W Dickey; Jeffrey Bernstein; Kathleen Schrank; Steven Kibler; Wendy Stephan; Matthew O Gribble; Paul Bienfang; Robert E Bowen; Stacey Degrasse; Harold A Flores Quintana; Christopher R Loeffler; Richard Weisman; Donna Blythe; Elisa Berdalet; Ram Ayyar; Danielle Clarkson-Townsend; Karen Swajian; Ronald Benner; Tom Brewer; Lora E Fleming
Journal:  Mar Drugs       Date:  2017-03-14       Impact factor: 5.118

3.  BOKP: A DNA Barcode Reference Library for Monitoring Herbal Drugs in the Korean Pharmacopeia.

Authors:  Jinxin Liu; Linchun Shi; Jingyuan Song; Wei Sun; Jianping Han; Xia Liu; Dianyun Hou; Hui Yao; Mingyue Li; Shilin Chen
Journal:  Front Pharmacol       Date:  2017-12-19       Impact factor: 5.810

4.  A Rapid Colorimetric Assay for On-Site Authentication of Cephalopod Species.

Authors:  Giuseppina Tatulli; Paola Cecere; Davide Maggioni; Andrea Galimberti; Pier Paolo Pompa
Journal:  Biosensors (Basel)       Date:  2020-11-24

5.  Development of Loop-Mediated Isothermal Amplification (LAMP) Assays for the Rapid Authentication of Three Swimming Crab Species.

Authors:  Soottawat Benjakul; Jirakrit Saetang
Journal:  Foods       Date:  2022-07-28

Review 6.  Ciguatera Mini Review: 21st Century Environmental Challenges and the Interdisciplinary Research Efforts Rising to Meet Them.

Authors:  Christopher R Loeffler; Luciana Tartaglione; Miriam Friedemann; Astrid Spielmeyer; Oliver Kappenstein; Dorina Bodi
Journal:  Int J Environ Res Public Health       Date:  2021-03-15       Impact factor: 3.390

  6 in total

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