Literature DB >> 33214251

Comment on "Ancient origins of allosteric activation in a Ser-Thr kinase".

Yeonwoo Park1, Jaeda E J Patton1, Georg K A Hochberg2, Joseph W Thornton3,4.   

Abstract

Hadzipasic et al (Reports, 21 February 2020, p. 912) used ancestral sequence reconstruction to identify historical sequence substitutions that putatively caused Aurora kinases to evolve allosteric regulation. We show that their results arise from using an implausible phylogeny and sparse sequence sampling. Addressing either problem reverses their inferences: Allostery and the amino acids that confer it were not gained during the diversification of eukaryotes but were lost in a subgroup of Fungi.
Copyright © 2020, American Association for the Advancement of Science.

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Year:  2020        PMID: 33214251      PMCID: PMC8162921          DOI: 10.1126/science.abc8301

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  11 in total

Review 1.  Microsporidia: biology and evolution of highly reduced intracellular parasites.

Authors:  Patrick J Keeling; Naomi M Fast
Journal:  Annu Rev Microbiol       Date:  2002-01-30       Impact factor: 15.500

2.  A novel mechanism for activation of the protein kinase Aurora A.

Authors:  Patrick A Eyers; Eleanor Erikson; Lin G Chen; James L Maller
Journal:  Curr Biol       Date:  2003-04-15       Impact factor: 10.834

3.  An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics.

Authors:  Henner Brinkmann; Mark van der Giezen; Yan Zhou; Gaëtan Poncelin de Raucourt; Hervé Philippe
Journal:  Syst Biol       Date:  2005-10       Impact factor: 15.683

4.  An essential function of the C. elegans ortholog of TPX2 is to localize activated aurora A kinase to mitotic spindles.

Authors:  Nurhan Ozlü; Martin Srayko; Kazuhisa Kinoshita; Bianca Habermann; Eileen T O'toole; Thomas Müller-Reichert; Natalie Schmalz; Arshad Desai; Anthony A Hyman
Journal:  Dev Cell       Date:  2005-08       Impact factor: 12.270

5.  Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative.

Authors:  Maria Anisimova; Olivier Gascuel
Journal:  Syst Biol       Date:  2006-08       Impact factor: 15.683

6.  Resolution of phylogenetic conflict in large data sets by increased taxon sampling.

Authors:  Shannon M Hedtke; Ted M Townsend; David M Hillis
Journal:  Syst Biol       Date:  2006-06       Impact factor: 15.683

Review 7.  Horizontal gene transfer: building the web of life.

Authors:  Shannon M Soucy; Jinling Huang; Johann Peter Gogarten
Journal:  Nat Rev Genet       Date:  2015-08       Impact factor: 53.242

8.  Animals and fungi are each other's closest relatives: congruent evidence from multiple proteins.

Authors:  S L Baldauf; J D Palmer
Journal:  Proc Natl Acad Sci U S A       Date:  1993-12-15       Impact factor: 11.205

9.  Resolving difficult phylogenetic questions: why more sequences are not enough.

Authors:  Hervé Philippe; Henner Brinkmann; Dennis V Lavrov; D Timothy J Littlewood; Michael Manuel; Gert Wörheide; Denis Baurain
Journal:  PLoS Biol       Date:  2011-03-15       Impact factor: 8.029

10.  Environmental survey meta-analysis reveals hidden diversity among unicellular opisthokonts.

Authors:  Javier del Campo; Iñaki Ruiz-Trillo
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

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  2 in total

Review 1.  Setting the stage for evolution of a new enzyme.

Authors:  Shelley D Copley
Journal:  Curr Opin Struct Biol       Date:  2021-04-14       Impact factor: 7.786

Review 2.  Ancestral sequence reconstruction - An underused approach to understand the evolution of gene function in plants?

Authors:  Federico Scossa; Alisdair R Fernie
Journal:  Comput Struct Biotechnol J       Date:  2021-03-16       Impact factor: 7.271

  2 in total

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