Literature DB >> 33865035

Setting the stage for evolution of a new enzyme.

Shelley D Copley1.   

Abstract

The evolution of novel enzymes has fueled the diversification of life on earth for billions of years. Insights into events that set the stage for the evolution of a new enzyme can be obtained from ancestral reconstruction and laboratory evolution. Ancestral reconstruction can reveal the emergence of a promiscuous activity in a pre-existing protein and the impact of subsequent mutations that enhance a new activity. Laboratory evolution provides a more holistic view by revealing mutations elsewhere in the genome that indirectly enhance the level of a newly important enzymatic activity. This review will highlight recent studies that probe the early stages of the evolution of a new enzyme from these complementary points of view.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Ancestral reconstruction; Cyclohexadienyl dehydratase; Enzyme evolution; Laboratory evolution; Ligninase; MetB; Methyl parathion hydrolase; PdxB; ProA

Mesh:

Substances:

Year:  2021        PMID: 33865035      PMCID: PMC8405452          DOI: 10.1016/j.sbi.2021.03.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   7.786


  59 in total

1.  Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes.

Authors:  A Maxwell Burroughs; Karen N Allen; Debra Dunaway-Mariano; L Aravind
Journal:  J Mol Biol       Date:  2006-07-07       Impact factor: 5.469

2.  Hyperstability and substrate promiscuity in laboratory resurrections of Precambrian β-lactamases.

Authors:  Valeria A Risso; Jose A Gavira; Diego F Mejia-Carmona; Eric A Gaucher; Jose M Sanchez-Ruiz
Journal:  J Am Chem Soc       Date:  2013-02-14       Impact factor: 15.419

3.  Adaptive evolution of Escherichia coli K-12 MG1655 during growth on a Nonnative carbon source, L-1,2-propanediol.

Authors:  Dae-Hee Lee; Bernhard Ø Palsson
Journal:  Appl Environ Microbiol       Date:  2010-04-30       Impact factor: 4.792

4.  [Study on Pseudomonas sp. WBC-3 capable of complete degradation of methylparathion].

Authors:  Yali Chen; Xianen Zhang; Hong Liu; Yinshan Wang; Xiangming Xia
Journal:  Wei Sheng Wu Xue Bao       Date:  2002-08

5.  Higher-order epistasis shapes the fitness landscape of a xenobiotic-degrading enzyme.

Authors:  Gloria Yang; Dave W Anderson; Florian Baier; Elias Dohmen; Nansook Hong; Paul D Carr; Shina Caroline Lynn Kamerlin; Colin J Jackson; Erich Bornberg-Bauer; Nobuhiko Tokuriki
Journal:  Nat Chem Biol       Date:  2019-10-21       Impact factor: 15.040

6.  Evolution of oligomeric state through allosteric pathways that mimic ligand binding.

Authors:  Tina Perica; Yasushi Kondo; Sandhya P Tiwari; Stephen H McLaughlin; Katherine R Kemplen; Xiuwei Zhang; Annette Steward; Nathalie Reuter; Jane Clarke; Sarah A Teichmann
Journal:  Science       Date:  2014-12-19       Impact factor: 47.728

7.  Evolution of minimal specificity and promiscuity in steroid hormone receptors.

Authors:  Geeta N Eick; Jennifer K Colucci; Michael J Harms; Eric A Ortlund; Joseph W Thornton
Journal:  PLoS Genet       Date:  2012-11-15       Impact factor: 5.917

8.  Mutations that improve efficiency of a weak-link enzyme are rare compared to adaptive mutations elsewhere in the genome.

Authors:  Andrew B Morgenthaler; Wallis R Kinney; Christopher C Ebmeier; Corinne M Walsh; Daniel J Snyder; Vaughn S Cooper; William M Old; Shelley D Copley
Journal:  Elife       Date:  2019-12-09       Impact factor: 8.140

9.  Origin of complexity in haemoglobin evolution.

Authors:  Shane A Chandler; Yang Liu; Anthony V Signore; Arvind S Pillai; Carlos R Cortez-Romero; Justin L P Benesch; Arthur Laganowsky; Jay F Storz; Georg K A Hochberg; Joseph W Thornton
Journal:  Nature       Date:  2020-05-20       Impact factor: 49.962

10.  Bacterial adaptation through loss of function.

Authors:  Alison K Hottes; Peter L Freddolino; Anupama Khare; Zachary N Donnell; Julia C Liu; Saeed Tavazoie
Journal:  PLoS Genet       Date:  2013-07-11       Impact factor: 5.917

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  3 in total

1.  An Integrated Method to Reconstruct Ancient Proteins.

Authors:  Amanda K Garcia; Evrim Fer; Cathryn Sephus; Betul Kacar
Journal:  Methods Mol Biol       Date:  2022

2.  Reconstruction of Nitrogenase Predecessors Suggests Origin from Maturase-Like Proteins.

Authors:  Amanda K Garcia; Bryan Kolaczkowski; Betül Kaçar
Journal:  Genome Biol Evol       Date:  2022-03-02       Impact factor: 3.416

Review 3.  Strategies for the Biodegradation of Polyfluorinated Compounds.

Authors:  Lawrence P Wackett
Journal:  Microorganisms       Date:  2022-08-17
  3 in total

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