Literature DB >> 26184597

Horizontal gene transfer: building the web of life.

Shannon M Soucy1, Jinling Huang2, Johann Peter Gogarten3.   

Abstract

Horizontal gene transfer (HGT) is the sharing of genetic material between organisms that are not in a parent-offspring relationship. HGT is a widely recognized mechanism for adaptation in bacteria and archaea. Microbial antibiotic resistance and pathogenicity are often associated with HGT, but the scope of HGT extends far beyond disease-causing organisms. In this Review, we describe how HGT has shaped the web of life using examples of HGT among prokaryotes, between prokaryotes and eukaryotes, and even between multicellular eukaryotes. We discuss replacement and additive HGT, the proposed mechanisms of HGT, selective forces that influence HGT, and the evolutionary impact of HGT on ancestral populations and existing populations such as the human microbiome.

Entities:  

Mesh:

Year:  2015        PMID: 26184597     DOI: 10.1038/nrg3962

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  106 in total

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Review 2.  Assessing the bacterial contribution to the plastid proteome.

Authors:  Huan Qiu; Dana C Price; Andreas P M Weber; Fabio Facchinelli; Hwan Su Yoon; Debashish Bhattacharya
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3.  Genomic footprints of a cryptic plastid endosymbiosis in diatoms.

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Review 4.  Biased gene transfer in microbial evolution.

Authors:  Cheryl P Andam; J Peter Gogarten
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5.  Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella.

Authors:  Danny W Rice; Andrew J Alverson; Aaron O Richardson; Gregory J Young; M Virginia Sanchez-Puerta; Jérôme Munzinger; Kerrie Barry; Jeffrey L Boore; Yan Zhang; Claude W dePamphilis; Eric B Knox; Jeffrey D Palmer
Journal:  Science       Date:  2013-12-20       Impact factor: 47.728

6.  Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants.

Authors:  Dana C Price; Cheong Xin Chan; Hwan Su Yoon; Eun Chan Yang; Huan Qiu; Andreas P M Weber; Rainer Schwacke; Jeferson Gross; Nicolas A Blouin; Chris Lane; Adrián Reyes-Prieto; Dion G Durnford; Jonathan A D Neilson; B Franz Lang; Gertraud Burger; Jürgen M Steiner; Wolfgang Löffelhardt; Jonathan E Meuser; Matthew C Posewitz; Steven Ball; Maria Cecilia Arias; Bernard Henrissat; Pedro M Coutinho; Stefan A Rensing; Aikaterini Symeonidi; Harshavardhan Doddapaneni; Beverley R Green; Veeran D Rajah; Jeffrey Boore; Debashish Bhattacharya
Journal:  Science       Date:  2012-02-17       Impact factor: 47.728

7.  Characterization of the first alginolytic operons in a marine bacterium: from their emergence in marine Flavobacteriia to their independent transfers to marine Proteobacteria and human gut Bacteroides.

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Journal:  Environ Microbiol       Date:  2012-04-19       Impact factor: 5.491

8.  Horizontal transfer of expressed genes in a parasitic flowering plant.

Authors:  Zhenxiang Xi; Robert K Bradley; Kenneth J Wurdack; Km Wong; M Sugumaran; Kirsten Bomblies; Joshua S Rest; Charles C Davis
Journal:  BMC Genomics       Date:  2012-06-08       Impact factor: 3.969

9.  Phylogenomic study indicates widespread lateral gene transfer in Entamoeba and suggests a past intimate relationship with parabasalids.

Authors:  Jessica R Grant; Laura A Katz
Journal:  Genome Biol Evol       Date:  2014-09       Impact factor: 3.416

10.  The role of reticulate evolution in creating innovation and complexity.

Authors:  Kristen S Swithers; Shannon M Soucy; J Peter Gogarten
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  331 in total

1.  Abundant toxin-related genes in the genomes of beneficial symbionts from deep-sea hydrothermal vent mussels.

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Journal:  Elife       Date:  2015-09-15       Impact factor: 8.140

2.  Evolution: Gene transfer in complex cells.

Authors:  John M Archibald
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Review 3.  A Coming of Age Story: Chlamydia in the Post-Genetic Era.

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Journal:  Infect Immun       Date:  2015-12-14       Impact factor: 3.441

4.  The Protease ClpXP and the PAS Domain Protein DivL Regulate CtrA and Gene Transfer Agent Production in Rhodobacter capsulatus.

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Journal:  Appl Environ Microbiol       Date:  2018-05-17       Impact factor: 4.792

5.  Each of 3,323 metabolic innovations in the evolution of E. coli arose through the horizontal transfer of a single DNA segment.

Authors:  Tin Yau Pang; Martin J Lercher
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-18       Impact factor: 11.205

6.  Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes.

Authors:  Hila Sberro; Brayon J Fremin; Soumaya Zlitni; Fredrik Edfors; Nicholas Greenfield; Michael P Snyder; Georgios A Pavlopoulos; Nikos C Kyrpides; Ami S Bhatt
Journal:  Cell       Date:  2019-08-08       Impact factor: 41.582

7.  Insights into TLCΦ lysogeny: A twist in the mechanism of IMEX integration.

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Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-22       Impact factor: 11.205

8.  Phylogeny and Evolution of RNA 3'-Nucleotidyltransferases in Bacteria.

Authors:  George H Jones
Journal:  J Mol Evol       Date:  2019-08-21       Impact factor: 2.395

9.  Biologically feasible gene trees, reconciliation maps and informative triples.

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Journal:  Algorithms Mol Biol       Date:  2017-08-29       Impact factor: 1.405

10.  Corrected Genome Annotations Reveal Gene Loss and Antibiotic Resistance as Drivers in the Fitness Evolution of Salmonella enterica Serovar Typhimurium.

Authors:  Sandip Paul; Evgeni V Sokurenko; Sujay Chattopadhyay
Journal:  J Bacteriol       Date:  2016-11-04       Impact factor: 3.490

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