Literature DB >> 33180112

Europe PMC in 2020.

Christine Ferguson1, Dayane Araújo1, Lynne Faulk1, Yuci Gou1, Audrey Hamelers1, Zhan Huang1, Michele Ide-Smith1, Maria Levchenko1, Nikos Marinos1, Rakesh Nambiar1, Maaly Nassar1, Michael Parkin1, Xingjun Pi1, Faisal Rahman1, Frances Rogers1, Yogmatee Roochun1, Shyamasree Saha1, Mohamed Selim1, Zunaira Shafique1, Shrey Sharma1, David Stephenson1, Francesco Talo'1, Arthur Thouvenin1, Santosh Tirunagari1, Vid Vartak1, Aravind Venkatesan1, Xiao Yang1, Johanna McEntyre1.   

Abstract

Europe PMC (https://europepmc.org) is a database of research articles, including peer reviewed full text articles and abstracts, and preprints - all freely available for use via website, APIs and bulk download. This article outlines new developments since 2017 where work has focussed on three key areas: (i) Europe PMC has added to its core content to include life science preprint abstracts and a special collection of full text of COVID-19-related preprints. Europe PMC is unique as an aggregator of biomedical preprints alongside peer-reviewed articles, with over 180 000 preprints available to search. (ii) Europe PMC has significantly expanded its links to content related to the publications, such as links to Unpaywall, providing wider access to full text, preprint peer-review platforms, all major curated data resources in the life sciences, and experimental protocols. The redesigned Europe PMC website features the PubMed abstract and corresponding PMC full text merged into one article page; there is more evident and user-friendly navigation within articles and to related content, plus a figure browse feature. (iii) The expanded annotations platform offers ∼1.3 billion text mined biological terms and concepts sourced from 10 providers and over 40 global data resources.
© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.

Entities:  

Year:  2020        PMID: 33180112     DOI: 10.1093/nar/gkaa994

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  12 in total

1.  Data Mining, Quality and Management in the Life Sciences.

Authors:  Amonida Zadissa; Rolf Apweiler
Journal:  Methods Mol Biol       Date:  2022

Review 2.  Quantifying research waste in ecology.

Authors:  Marija Purgar; Tin Klanjscek; Antica Culina
Journal:  Nat Ecol Evol       Date:  2022-07-21       Impact factor: 19.100

3.  Recent applications of metabolomics in plant breeding.

Authors:  Nozomu Sakurai
Journal:  Breed Sci       Date:  2022-02-03       Impact factor: 2.014

4.  A call to eradicate non-inclusive terms from the life sciences.

Authors:  Aziz Khan
Journal:  Elife       Date:  2021-02-08       Impact factor: 8.140

5.  The European Bioinformatics Institute (EMBL-EBI) in 2021.

Authors:  Gaia Cantelli; Alex Bateman; Cath Brooksbank; Anton I Petrov; Rahuman S Malik-Sheriff; Michele Ide-Smith; Henning Hermjakob; Paul Flicek; Rolf Apweiler; Ewan Birney; Johanna McEntyre
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

6.  The European Genome-phenome Archive in 2021.

Authors:  Mallory Ann Freeberg; Lauren A Fromont; Teresa D'Altri; Anna Foix Romero; Jorge Izquierdo Ciges; Aina Jene; Giselle Kerry; Mauricio Moldes; Roberto Ariosa; Silvia Bahena; Daniel Barrowdale; Marcos Casado Barbero; Dietmar Fernandez-Orth; Carles Garcia-Linares; Emilio Garcia-Rios; Frédéric Haziza; Bela Juhasz; Oscar Martinez Llobet; Gemma Milla; Anand Mohan; Manuel Rueda; Aravind Sankar; Dona Shaju; Ashutosh Shimpi; Babita Singh; Coline Thomas; Sabela de la Torre; Umuthan Uyan; Claudia Vasallo; Paul Flicek; Roderic Guigo; Arcadi Navarro; Helen Parkinson; Thomas Keane; Jordi Rambla
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

7.  Results availability and timeliness of registered COVID-19 clinical trials: interim cross-sectional results from the DIRECCT study.

Authors:  Maia Salholz-Hillel; Peter Grabitz; Nicholas J DeVito; Molly Pugh-Jones; Daniel Strech
Journal:  BMJ Open       Date:  2021-11-22       Impact factor: 2.692

8.  PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types.

Authors:  Haris Zafeiropoulos; Savvas Paragkamian; Stelios Ninidakis; Georgios A Pavlopoulos; Lars Juhl Jensen; Evangelos Pafilis
Journal:  Microorganisms       Date:  2022-01-26

9.  The European Bioinformatics Institute: empowering cooperation in response to a global health crisis.

Authors:  Gaia Cantelli; Guy Cochrane; Cath Brooksbank; Ellen McDonagh; Paul Flicek; Johanna McEntyre; Ewan Birney; Rolf Apweiler
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

10.  Gene Ontology curation of the blood-brain barrier to improve the analysis of Alzheimer's and other neurological diseases.

Authors:  Shirin C C Saverimuttu; Barbara Kramarz; Milagros Rodríguez-López; Penelope Garmiri; Helen Attrill; Katherine E Thurlow; Marios Makris; Sandra de Miranda Pinheiro; Sandra Orchard; Ruth C Lovering
Journal:  Database (Oxford)       Date:  2021-10-26       Impact factor: 3.451

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