Literature DB >> 33245775

The European Bioinformatics Institute: empowering cooperation in response to a global health crisis.

Gaia Cantelli1, Guy Cochrane1, Cath Brooksbank1, Ellen McDonagh1,2, Paul Flicek1, Johanna McEntyre1, Ewan Birney1, Rolf Apweiler1.   

Abstract

The European Bioinformatics Institute (EMBL-EBI; https://www.ebi.ac.uk/) provides freely available data and bioinformatics services to the scientific community, alongside its research activity and training provision. The 2020 COVID-19 pandemic has brought to the forefront a need for the scientific community to work even more cooperatively to effectively tackle a global health crisis. EMBL-EBI has been able to build on its position to contribute to the fight against COVID-19 in a number of ways. Firstly, EMBL-EBI has used its infrastructure, expertise and network of international collaborations to help build the European COVID-19 Data Platform (https://www.covid19dataportal.org/), which brings together COVID-19 biomolecular data and connects it to researchers, clinicians and public health professionals. By September 2020, the COVID-19 Data Platform has integrated in excess of 170 000 COVID-19 biomolecular data and literature records, collected through a number of EMBL-EBI resources. Secondly, EMBL-EBI has strived to continue its support of the life science communities through the crisis, with updated Training provision and improved service provision throughout its resources. The COVID-19 pandemic has highlighted the importance of EMBL-EBI's core principles, including international cooperation, resource sharing and central data brokering, and has further empowered scientific cooperation.
© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Year:  2021        PMID: 33245775      PMCID: PMC7778996          DOI: 10.1093/nar/gkaa1077

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  29 in total

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Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  UniProt: the universal protein knowledgebase.

Authors:  The UniProt Consortium
Journal:  Nucleic Acids Res       Date:  2018-03-16       Impact factor: 16.971

3.  MetaboLights: a resource evolving in response to the needs of its scientific community.

Authors:  Kenneth Haug; Keeva Cochrane; Venkata Chandrasekhar Nainala; Mark Williams; Jiakang Chang; Kalai Vanii Jayaseelan; Claire O'Donovan
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

4.  The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.

Authors:  Eric W Deutsch; Nuno Bandeira; Vagisha Sharma; Yasset Perez-Riverol; Jeremy J Carver; Deepti J Kundu; David García-Seisdedos; Andrew F Jarnuczak; Suresh Hewapathirana; Benjamin S Pullman; Julie Wertz; Zhi Sun; Shin Kawano; Shujiro Okuda; Yu Watanabe; Henning Hermjakob; Brendan MacLean; Michael J MacCoss; Yunping Zhu; Yasushi Ishihama; Juan A Vizcaíno
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

5.  Europe PMC in 2020.

Authors:  Christine Ferguson; Dayane Araújo; Lynne Faulk; Yuci Gou; Audrey Hamelers; Zhan Huang; Michele Ide-Smith; Maria Levchenko; Nikos Marinos; Rakesh Nambiar; Maaly Nassar; Michael Parkin; Xingjun Pi; Faisal Rahman; Frances Rogers; Yogmatee Roochun; Shyamasree Saha; Mohamed Selim; Zunaira Shafique; Shrey Sharma; David Stephenson; Francesco Talo'; Arthur Thouvenin; Santosh Tirunagari; Vid Vartak; Aravind Venkatesan; Xiao Yang; Johanna McEntyre
Journal:  Nucleic Acids Res       Date:  2020-11-12       Impact factor: 16.971

6.  Connecting data, tools and people across Europe: ELIXIR's response to the COVID-19 pandemic.

Authors:  Niklas Blomberg; Katharina B Lauer
Journal:  Eur J Hum Genet       Date:  2020-05-15       Impact factor: 4.246

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Authors:  Birgit H M Meldal; Hema Bye-A-Jee; Lukáš Gajdoš; Zuzana Hammerová; Aneta Horácková; Filip Melicher; Livia Perfetto; Daniel Pokorný; Milagros Rodriguez Lopez; Alžbeta Türková; Edith D Wong; Zengyan Xie; Elisabeth Barrera Casanova; Noemi Del-Toro; Maximilian Koch; Pablo Porras; Henning Hermjakob; Sandra Orchard
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8.  PDBe-KB: a community-driven resource for structural and functional annotations.

Authors: 
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

9.  Pfam: The protein families database in 2021.

Authors:  Jaina Mistry; Sara Chuguransky; Lowri Williams; Matloob Qureshi; Gustavo A Salazar; Erik L L Sonnhammer; Silvio C E Tosatto; Lisanna Paladin; Shriya Raj; Lorna J Richardson; Robert D Finn; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

10.  Rfam 14: expanded coverage of metagenomic, viral and microRNA families.

Authors:  Ioanna Kalvari; Eric P Nawrocki; Nancy Ontiveros-Palacios; Joanna Argasinska; Kevin Lamkiewicz; Manja Marz; Sam Griffiths-Jones; Claire Toffano-Nioche; Daniel Gautheret; Zasha Weinberg; Elena Rivas; Sean R Eddy; Robert D Finn; Alex Bateman; Anton I Petrov
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

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  8 in total

1.  Data Mining, Quality and Management in the Life Sciences.

Authors:  Amonida Zadissa; Rolf Apweiler
Journal:  Methods Mol Biol       Date:  2022

2.  The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types.

Authors:  Tingting Chen; Xu Chen; Sisi Zhang; Junwei Zhu; Bixia Tang; Anke Wang; Lili Dong; Zhewen Zhang; Caixia Yu; Yanling Sun; Lianjiang Chi; Huanxin Chen; Shuang Zhai; Yubin Sun; Li Lan; Xin Zhang; Jingfa Xiao; Yiming Bao; Yanqing Wang; Zhang Zhang; Wenming Zhao
Journal:  Genomics Proteomics Bioinformatics       Date:  2021-08-13       Impact factor: 6.409

3.  Search and sequence analysis tools services from EMBL-EBI in 2022.

Authors:  Fábio Madeira; Matt Pearce; Adrian R N Tivey; Prasad Basutkar; Joon Lee; Ossama Edbali; Nandana Madhusoodanan; Anton Kolesnikov; Rodrigo Lopez
Journal:  Nucleic Acids Res       Date:  2022-04-12       Impact factor: 19.160

4.  The 2021 Nucleic Acids Research database issue and the online molecular biology database collection.

Authors:  Daniel J Rigden; Xosé M Fernández
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

5.  The European Bioinformatics Institute (EMBL-EBI) in 2021.

Authors:  Gaia Cantelli; Alex Bateman; Cath Brooksbank; Anton I Petrov; Rahuman S Malik-Sheriff; Michele Ide-Smith; Henning Hermjakob; Paul Flicek; Rolf Apweiler; Ewan Birney; Johanna McEntyre
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

6.  Revised eutherian gene collections.

Authors:  Marko Premzl
Journal:  BMC Genom Data       Date:  2022-07-23

7.  GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy.

Authors:  Donovan H Parks; Maria Chuvochina; Christian Rinke; Aaron J Mussig; Pierre-Alain Chaumeil; Philip Hugenholtz
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

Review 8.  The International Human Genome Project.

Authors:  Ewan Birney
Journal:  Hum Mol Genet       Date:  2021-10-01       Impact factor: 6.150

  8 in total

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