Literature DB >> 35507257

Data Mining, Quality and Management in the Life Sciences.

Amonida Zadissa1, Rolf Apweiler2.   

Abstract

With the evermore emphasis put on open science and its invaluable benefits to the scientific community, it is no longer the case where a research project simply ends with a scientific publication. The benefits of data sharing and reproducibility of results have taken the centerpiece within the life science research supported by FAIR principles that firmly underline the importance of open data. The current data-intensive multidisciplinary research has also highlighted the significance of how data is mined and managed. Here we describe some of the features adopted by EMBL-EBI data resources to support data mining, data quality, and data management. We also highlight how EMBL-EBI has responded to the current pandemic through its data resources.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Biology-driven portals; Biomolecular databases; Data deposition databases; Data management; Data quality; Knowledgebases

Mesh:

Year:  2022        PMID: 35507257     DOI: 10.1007/978-1-0716-2095-3_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  35 in total

1.  The availability of research data declines rapidly with article age.

Authors:  Timothy H Vines; Arianne Y K Albert; Rose L Andrew; Florence Débarre; Dan G Bock; Michelle T Franklin; Kimberly J Gilbert; Jean-Sébastien Moore; Sébastien Renaut; Diana J Rennison
Journal:  Curr Biol       Date:  2013-12-19       Impact factor: 10.834

2.  Data Science and its Relationship to Big Data and Data-Driven Decision Making.

Authors:  Foster Provost; Tom Fawcett
Journal:  Big Data       Date:  2013-03       Impact factor: 2.128

3.  Database resources of the National Center for Biotechnology Information.

Authors:  Eric W Sayers; Jeffrey Beck; Evan E Bolton; Devon Bourexis; James R Brister; Kathi Canese; Donald C Comeau; Kathryn Funk; Sunghwan Kim; William Klimke; Aron Marchler-Bauer; Melissa Landrum; Stacy Lathrop; Zhiyong Lu; Thomas L Madden; Nuala O'Leary; Lon Phan; Sanjida H Rangwala; Valerie A Schneider; Yuri Skripchenko; Jiyao Wang; Jian Ye; Barton W Trawick; Kim D Pruitt; Stephen T Sherry
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

4.  Big Data: Astronomical or Genomical?

Authors:  Zachary D Stephens; Skylar Y Lee; Faraz Faghri; Roy H Campbell; Chengxiang Zhai; Miles J Efron; Ravishankar Iyer; Michael C Schatz; Saurabh Sinha; Gene E Robinson
Journal:  PLoS Biol       Date:  2015-07-07       Impact factor: 8.029

5.  The variable quality of metadata about biological samples used in biomedical experiments.

Authors:  Rafael S Gonçalves; Mark A Musen
Journal:  Sci Data       Date:  2019-02-19       Impact factor: 6.444

Review 6.  Genomics and data science: an application within an umbrella.

Authors:  Fábio C P Navarro; Hussein Mohsen; Chengfei Yan; Shantao Li; Mengting Gu; William Meyerson; Mark Gerstein
Journal:  Genome Biol       Date:  2019-05-29       Impact factor: 13.583

7.  The European Bioinformatics Institute in 2018: tools, infrastructure and training.

Authors:  Charles E Cook; Rodrigo Lopez; Oana Stroe; Guy Cochrane; Cath Brooksbank; Ewan Birney; Rolf Apweiler
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

8.  The FAIR Guiding Principles for scientific data management and stewardship.

Authors:  Mark D Wilkinson; Michel Dumontier; I Jsbrand Jan Aalbersberg; Gabrielle Appleton; Myles Axton; Arie Baak; Niklas Blomberg; Jan-Willem Boiten; Luiz Bonino da Silva Santos; Philip E Bourne; Jildau Bouwman; Anthony J Brookes; Tim Clark; Mercè Crosas; Ingrid Dillo; Olivier Dumon; Scott Edmunds; Chris T Evelo; Richard Finkers; Alejandra Gonzalez-Beltran; Alasdair J G Gray; Paul Groth; Carole Goble; Jeffrey S Grethe; Jaap Heringa; Peter A C 't Hoen; Rob Hooft; Tobias Kuhn; Ruben Kok; Joost Kok; Scott J Lusher; Maryann E Martone; Albert Mons; Abel L Packer; Bengt Persson; Philippe Rocca-Serra; Marco Roos; Rene van Schaik; Susanna-Assunta Sansone; Erik Schultes; Thierry Sengstag; Ted Slater; George Strawn; Morris A Swertz; Mark Thompson; Johan van der Lei; Erik van Mulligen; Jan Velterop; Andra Waagmeester; Peter Wittenburg; Katherine Wolstencroft; Jun Zhao; Barend Mons
Journal:  Sci Data       Date:  2016-03-15       Impact factor: 6.444

9.  The Image Data Resource: A Bioimage Data Integration and Publication Platform.

Authors:  Eleanor Williams; Josh Moore; Simon W Li; Gabriella Rustici; Aleksandra Tarkowska; Anatole Chessel; Simone Leo; Bálint Antal; Richard K Ferguson; Ugis Sarkans; Alvis Brazma; Rafael E Carazo Salas; Jason R Swedlow
Journal:  Nat Methods       Date:  2017-06-19       Impact factor: 28.547

10.  The European Bioinformatics Institute: empowering cooperation in response to a global health crisis.

Authors:  Gaia Cantelli; Guy Cochrane; Cath Brooksbank; Ellen McDonagh; Paul Flicek; Johanna McEntyre; Ewan Birney; Rolf Apweiler
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

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