Literature DB >> 33168632

Hyperosmotic phase separation: Condensates beyond inclusions, granules and organelles.

Ameya P Jalihal1, Andreas Schmidt2, Guoming Gao3, Saffron R Little4, Sethuramasundaram Pitchiaya5, Nils G Walter6.   

Abstract

Biological liquid-liquid phase separation has gained considerable attention in recent years as a driving force for the assembly of subcellular compartments termed membraneless organelles. The field has made great strides in elucidating the molecular basis of biomolecular phase separation in various disease, stress response, and developmental contexts. Many important biological consequences of such "condensation" are now emerging from in vivo studies. Here we review recent work from our group and others showing that many proteins undergo rapid, reversible condensation in the cellular response to ubiquitous environmental fluctuations such as osmotic changes. We discuss molecular crowding as an important driver of condensation in these responses and suggest that a significant fraction of the proteome is poised to undergo phase separation under physiological conditions. In addition, we review methods currently emerging to visualize, quantify, and modulate the dynamics of intracellular condensates in live cells. Finally, we propose a metaphor for rapid phase separation based on cloud formation, reasoning that our familiar experiences with the readily reversible condensation of water droplets help understand the principle of phase separation. Overall, we provide an account of how biological phase separation supports the highly intertwined relationship between the composition and dynamic internal organization of cells, thus facilitating extremely rapid reorganization in response to internal and external fluctuations.
Copyright © 2020 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  aggregation; biophysics; cloud formation; fluorescence; macromolecular crowding; membraneless organelles; mesoscale organization; protein domain; stress response

Mesh:

Year:  2020        PMID: 33168632      PMCID: PMC7948973          DOI: 10.1074/jbc.REV120.010899

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  134 in total

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Authors:  Amitabha Majumdar; Wanda Colón Cesario; Erica White-Grindley; Huoqing Jiang; Fengzhen Ren; Mohammed Repon Khan; Liying Li; Edward Man-Lik Choi; Kasthuri Kannan; Fengli Guo; Jay Unruh; Brian Slaughter; Kausik Si
Journal:  Cell       Date:  2012-01-26       Impact factor: 41.582

Review 2.  The macromolecular crowding effect--from in vitro into the cell.

Authors:  David Gnutt; Simon Ebbinghaus
Journal:  Biol Chem       Date:  2016-01       Impact factor: 3.915

3.  A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

Authors:  Avinash Patel; Hyun O Lee; Louise Jawerth; Shovamayee Maharana; Marcus Jahnel; Marco Y Hein; Stoyno Stoynov; Julia Mahamid; Shambaditya Saha; Titus M Franzmann; Andrej Pozniakovski; Ina Poser; Nicola Maghelli; Loic A Royer; Martin Weigert; Eugene W Myers; Stephan Grill; David Drechsel; Anthony A Hyman; Simon Alberti
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

Review 4.  Coming Together: RNAs and Proteins Assemble under the Single-Molecule Fluorescence Microscope.

Authors:  Ameya P Jalihal; Paul E Lund; Nils G Walter
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-04-01       Impact factor: 10.005

Review 5.  The molecular language of membraneless organelles.

Authors:  Edward Gomes; James Shorter
Journal:  J Biol Chem       Date:  2018-07-25       Impact factor: 5.157

6.  The role of hyperosmotic stress in inflammation and disease.

Authors:  Chad Brocker; David C Thompson; Vasilis Vasiliou
Journal:  Biomol Concepts       Date:  2012-08

Review 7.  A guide to regulation of the formation of biomolecular condensates.

Authors:  Anna Bratek-Skicki; Rita Pancsa; Balint Meszaros; Joris Van Lindt; Peter Tompa
Journal:  FEBS J       Date:  2020-03-14       Impact factor: 5.542

8.  Composition-dependent thermodynamics of intracellular phase separation.

Authors:  Joshua A Riback; Lian Zhu; Mylene C Ferrolino; Michele Tolbert; Diana M Mitrea; David W Sanders; Ming-Tzo Wei; Richard W Kriwacki; Clifford P Brangwynne
Journal:  Nature       Date:  2020-05-06       Impact factor: 49.962

9.  The coilin interactome identifies hundreds of small noncoding RNAs that traffic through Cajal bodies.

Authors:  Martin Machyna; Stephanie Kehr; Korinna Straube; Dennis Kappei; Frank Buchholz; Falk Butter; Jernej Ule; Jana Hertel; Peter F Stadler; Karla M Neugebauer
Journal:  Mol Cell       Date:  2014-11-06       Impact factor: 17.970

Review 10.  Matter over mind: Liquid phase separation and neurodegeneration.

Authors:  Shana Elbaum-Garfinkle
Journal:  J Biol Chem       Date:  2019-03-26       Impact factor: 5.157

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  5 in total

1.  RNA at the surface of phase-separated condensates impacts their size and number.

Authors:  Audrey Cochard; Marina Garcia-Jove Navarro; Leonard Piroska; Shunnichi Kashida; Michel Kress; Dominique Weil; Zoher Gueroui
Journal:  Biophys J       Date:  2022-03-29       Impact factor: 3.699

2.  Myosin 1D and the branched actin network control the condensation of p62 bodies.

Authors:  Xuezhao Feng; Wanqing Du; Mingrui Ding; Wenkang Zhao; Xirenayi Xirefu; Meisheng Ma; Yuhui Zhuang; Xiaoyu Fu; Jiangfeng Shen; Jinpei Zhang; Xiuying Lei; Daxiao Sun; Qing Xi; Yiliyasi Aisa; Qian Chen; Ying Li; Wenjuan Wang; Shanjin Huang; Li Yu; Pilong Li; Na Mi
Journal:  Cell Res       Date:  2022-04-27       Impact factor: 46.297

3.  The effects of molecular crowding and CpG hypermethylation on DNA G-quadruplexes formed by the C9orf72 nucleotide repeat expansion.

Authors:  Kadir A Ozcan; Layla T Ghaffari; Aaron R Haeusler
Journal:  Sci Rep       Date:  2021-12-01       Impact factor: 4.996

4.  A hydro-osmotic coarsening theory of biological cavity formation.

Authors:  Mathieu Le Verge-Serandour; Hervé Turlier
Journal:  PLoS Comput Biol       Date:  2021-09-03       Impact factor: 4.475

5.  Hydrogen Bond Arrangement Is Shown to Differ in Coexisting Phases of Aqueous Two-Phase Systems.

Authors:  Pedro P Madeira; Amber R Titus; Luisa A Ferreira; Alexander I Belgovskiy; Elizabeth K Mann; Jay Adin Mann; William V Meyer; Anthony E Smart; Vladimir N Uversky; Boris Y Zaslavsky
Journal:  Biomolecules       Date:  2021-11-30
  5 in total

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