Literature DB >> 32080961

A guide to regulation of the formation of biomolecular condensates.

Anna Bratek-Skicki1, Rita Pancsa2, Balint Meszaros3, Joris Van Lindt1, Peter Tompa1,2,4.   

Abstract

Cellular organelles that lack a surrounding lipid bilayer, such as the nucleolus and stress granule, represent a newly recognized, general paradigm of cellular organization. The formation of such biomolecular condensates that include 'membraneless organelles' (MLOs) by liquid-liquid phase separation (LLPS) has been in the focus of a surge of recent studies. Through a combination of in vitro and in vivo approaches, thousands of potential phase-separating proteins have been identified, and it was found that different cellular MLOs share many common components. These perplexing observations raise the question of how cells regulate the timing and specificity of LLPS, and ensure that different MLOs form and disperse at the right moment and cellular location and can preserve their identity and physical separation. This guide gives an overview of basic regulatory mechanisms, which manifest through the action of intrinsic regulatory elements, alternative splicing, post-translational modifications, and a broad range of phase-separating partners. We also elaborate on the cellular integration of these different mechanisms and highlight how complex regulation can orchestrate the parallel functioning of a dozen or so different MLOs in the cell.
© 2020 Federation of European Biochemical Societies.

Entities:  

Keywords:  interaction partner; liquid; liquid phase separation; membraneless organelle; phase transition; post-translational modification

Year:  2020        PMID: 32080961     DOI: 10.1111/febs.15254

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  15 in total

1.  Probing Liquid-Liquid Phase Separation of RNA-Binding Proteins In Vitro and In Vivo.

Authors:  Stephanie Heinrich; Maria Hondele
Journal:  Methods Mol Biol       Date:  2022

Review 2.  A framework for understanding the functions of biomolecular condensates across scales.

Authors:  Andrew S Lyon; William B Peeples; Michael K Rosen
Journal:  Nat Rev Mol Cell Biol       Date:  2020-11-09       Impact factor: 94.444

3.  A comprehensive analysis of RAS-effector interactions reveals interaction hotspots and new binding partners.

Authors:  Soheila Rezaei Adariani; Neda S Kazemein Jasemi; Farhad Bazgir; Christoph Wittich; Ehsan Amin; Claus A M Seidel; Radovan Dvorsky; Mohammad R Ahmadian
Journal:  J Biol Chem       Date:  2021-04-27       Impact factor: 5.157

4.  Evolutionary Study of Disorder in Protein Sequences.

Authors:  Kristina Kastano; Gábor Erdős; Pablo Mier; Gregorio Alanis-Lobato; Vasilis J Promponas; Zsuzsanna Dosztányi; Miguel A Andrade-Navarro
Journal:  Biomolecules       Date:  2020-10-06

Review 5.  Liquid-Liquid Phase Separation in Crowded Environments.

Authors:  Alain A M André; Evan Spruijt
Journal:  Int J Mol Sci       Date:  2020-08-17       Impact factor: 5.923

Review 6.  Relevance of Electrostatic Charges in Compactness, Aggregation, and Phase Separation of Intrinsically Disordered Proteins.

Authors:  Greta Bianchi; Sonia Longhi; Rita Grandori; Stefania Brocca
Journal:  Int J Mol Sci       Date:  2020-08-27       Impact factor: 5.923

Review 7.  Liquid-Liquid Phase Separation by Intrinsically Disordered Protein Regions of Viruses: Roles in Viral Life Cycle and Control of Virus-Host Interactions.

Authors:  Stefania Brocca; Rita Grandori; Sonia Longhi; Vladimir Uversky
Journal:  Int J Mol Sci       Date:  2020-11-28       Impact factor: 5.923

8.  Stress granules display bistable dynamics modulated by Cdk.

Authors:  Galal Yahya; Alexis P Pérez; Mònica B Mendoza; Eva Parisi; David F Moreno; Marta H Artés; Carme Gallego; Martí Aldea
Journal:  J Cell Biol       Date:  2021-03-01       Impact factor: 10.539

Review 9.  Hyperosmotic phase separation: Condensates beyond inclusions, granules and organelles.

Authors:  Ameya P Jalihal; Andreas Schmidt; Guoming Gao; Saffron R Little; Sethuramasundaram Pitchiaya; Nils G Walter
Journal:  J Biol Chem       Date:  2020-11-23       Impact factor: 5.157

10.  Integration of Data from Liquid-Liquid Phase Separation Databases Highlights Concentration and Dosage Sensitivity of LLPS Drivers.

Authors:  Nazanin Farahi; Tamas Lazar; Shoshana J Wodak; Peter Tompa; Rita Pancsa
Journal:  Int J Mol Sci       Date:  2021-03-16       Impact factor: 5.923

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