Literature DB >> 26351910

The macromolecular crowding effect--from in vitro into the cell.

David Gnutt, Simon Ebbinghaus.   

Abstract

The influence of the cellular milieu, a complex and crowded solvent, is often neglected when biomolecular structure and function are studied in vitro. To mimic the cellular environment, crowding effects are commonly induced in vitro using artificial crowding agents like Ficoll or dextran. However, it is unclear if such effects are also observed in cellulo. Diverging results on protein stability in living cells point out the need for new quantitative methods to investigate the contributions of excluded volume and nonspecific interactions to the cellular crowding effect. We show how new crowding sensitive probes may be utilized to directly investigate crowding effects in living cells. Moreover, we discuss processes where crowding effects could play a crucial role in molecular cell biology.

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Year:  2016        PMID: 26351910     DOI: 10.1515/hsz-2015-0161

Source DB:  PubMed          Journal:  Biol Chem        ISSN: 1431-6730            Impact factor:   3.915


  25 in total

Review 1.  Microorganisms maintain crowding homeostasis.

Authors:  Jonas van den Berg; Arnold J Boersma; Bert Poolman
Journal:  Nat Rev Microbiol       Date:  2017-03-27       Impact factor: 60.633

2.  Design and Properties of Genetically Encoded Probes for Sensing Macromolecular Crowding.

Authors:  Boqun Liu; Christoffer Åberg; Floris J van Eerden; Siewert J Marrink; Bert Poolman; Arnold J Boersma
Journal:  Biophys J       Date:  2017-05-09       Impact factor: 4.033

3.  Physicochemical code for quinary protein interactions in Escherichia coli.

Authors:  Xin Mu; Seongil Choi; Lisa Lang; David Mowray; Nikolay V Dokholyan; Jens Danielsson; Mikael Oliveberg
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-23       Impact factor: 11.205

Review 4.  Whole-Cell Models and Simulations in Molecular Detail.

Authors:  Michael Feig; Yuji Sugita
Journal:  Annu Rev Cell Dev Biol       Date:  2019-07-12       Impact factor: 13.827

Review 5.  Toward an understanding of biochemical equilibria within living cells.

Authors:  Germán Rivas; Allen P Minton
Journal:  Biophys Rev       Date:  2017-12-12

6.  Molecular crowding accelerates aggregation of α-synuclein by altering its folding pathway.

Authors:  Soumojit Biswas; Antara Bhadra; Sunidhi Lakhera; Monika Soni; Venkataharsha Panuganti; Swati Jain; Ipsita Roy
Journal:  Eur Biophys J       Date:  2021-01-02       Impact factor: 1.733

Review 7.  Macromolecular Crowding In Vitro, In Vivo, and In Between.

Authors:  Germán Rivas; Allen P Minton
Journal:  Trends Biochem Sci       Date:  2016-09-23       Impact factor: 13.807

8.  Slow-Down in Diffusion in Crowded Protein Solutions Correlates with Transient Cluster Formation.

Authors:  Grzegorz Nawrocki; Po-Hung Wang; Isseki Yu; Yuji Sugita; Michael Feig
Journal:  J Phys Chem B       Date:  2017-11-30       Impact factor: 2.991

9.  Evidence for macromolecular crowding as a direct apoptotic stimulus.

Authors:  Priyanka S Rana; Manabu Kurokawa; Michael A Model
Journal:  J Cell Sci       Date:  2020-05-11       Impact factor: 5.285

10.  Competition of individual domain folding with inter-domain interaction in WW domain engineered repeat proteins.

Authors:  Kapil Dave; Andrei G Gasic; Margaret S Cheung; M Gruebele
Journal:  Phys Chem Chem Phys       Date:  2019-11-13       Impact factor: 3.676

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