Literature DB >> 33128282

Prebiotically Plausible RNA Activation Compatible with Ribozyme-Catalyzed Ligation.

Emilie Yeonwha Song1, Eddy Ivanhoe Jiménez2, Huacan Lin2, Kristian Le Vay1, Ramanarayanan Krishnamurthy2, Hannes Mutschler1,3.   

Abstract

RNA-catalyzed RNA ligation is widely believed to be a key reaction for primordial biology. However, since typical chemical routes towards activating RNA substrates are incompatible with ribozyme catalysis, it remains unclear how prebiotic systems generated and sustained pools of activated building blocks needed to form increasingly larger and complex RNA. Herein, we demonstrate in situ activation of RNA substrates under reaction conditions amenable to catalysis by the hairpin ribozyme. We found that diamidophosphate (DAP) and imidazole drive the formation of 2',3'-cyclic phosphate RNA mono- and oligonucleotides from monophosphorylated precursors in frozen water-ice. This long-lived activation enables iterative enzymatic assembly of long RNAs. Our results provide a plausible scenario for the generation of higher-energy substrates required to fuel ribozyme-catalyzed RNA synthesis in the absence of a highly evolved metabolism.
© 2020 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH.

Entities:  

Keywords:  RNA; diamidophosphate; early Earth; prebiotic chemistry; ribozymes

Mesh:

Substances:

Year:  2020        PMID: 33128282      PMCID: PMC7898671          DOI: 10.1002/anie.202010918

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   16.823


  37 in total

1.  Letter: Oligonucleotide synthesis catalyzed by the Zn-2+ ion.

Authors:  H Sawai; L E Orgel
Journal:  J Am Chem Soc       Date:  1975-06-11       Impact factor: 15.419

2.  Ligation activity of fragmented ribozymes in frozen solution: implications for the RNA world.

Authors:  Alexander V Vlassov; Brian H Johnston; Laura F Landweber; Sergei A Kazakov
Journal:  Nucleic Acids Res       Date:  2004-05-25       Impact factor: 16.971

3.  The enthalpies of hydrolysis of acyclic, monocyclic, and glycoside cyclic phosphate diesters.

Authors:  J A Gerlt; F H Westheimer; J M Sturtevant
Journal:  J Biol Chem       Date:  1975-07-10       Impact factor: 5.157

4.  Hairpin ribozyme mediated RNA recombination.

Authors:  Robert Hieronymus; Simon Peter Godehard; Darko Balke; Sabine Müller
Journal:  Chem Commun (Camb)       Date:  2016-03-21       Impact factor: 6.222

5.  Freeze-thaw cycles as drivers of complex ribozyme assembly.

Authors:  Hannes Mutschler; Aniela Wochner; Philipp Holliger
Journal:  Nat Chem       Date:  2015-05-04       Impact factor: 24.427

6.  DrugBank: a comprehensive resource for in silico drug discovery and exploration.

Authors:  David S Wishart; Craig Knox; An Chi Guo; Savita Shrivastava; Murtaza Hassanali; Paul Stothard; Zhan Chang; Jennifer Woolsey
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

7.  Sequence-controlled RNA self-processing: computational design, biochemical analysis, and visualization by AFM.

Authors:  Sonja Petkovic; Stefan Badelt; Stephan Block; Christoph Flamm; Mihaela Delcea; Ivo Hofacker; Sabine Müller
Journal:  RNA       Date:  2015-05-21       Impact factor: 4.942

8.  A ribozyme that triphosphorylates RNA 5'-hydroxyl groups.

Authors:  Janina E Moretti; Ulrich F Müller
Journal:  Nucleic Acids Res       Date:  2014-01-21       Impact factor: 16.971

9.  RNA catalysis, thermodynamics and the origin of life.

Authors:  William G Scott; Abraham Szöke; Josh Blaustein; Sara M O'Rourke; Michael P Robertson
Journal:  Life (Basel)       Date:  2014-04-10

10.  A Highly Reactive Imidazolium-Bridged Dinucleotide Intermediate in Nonenzymatic RNA Primer Extension.

Authors:  Travis Walton; Jack W Szostak
Journal:  J Am Chem Soc       Date:  2016-09-01       Impact factor: 15.419

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  3 in total

1.  A GTP-synthesizing ribozyme selected by metabolic coupling to an RNA polymerase ribozyme.

Authors:  Arvin Akoopie; Joshua T Arriola; Douglas Magde; Ulrich F Müller
Journal:  Sci Adv       Date:  2021-10-06       Impact factor: 14.136

2.  A Ribonucleotide ↔ Phosphoramidate Reaction Network Optimized by Computer-Aided Design.

Authors:  Andreas Englert; Julian F Vogel; Tim Bergner; Jessica Loske; Max von Delius
Journal:  J Am Chem Soc       Date:  2022-08-11       Impact factor: 16.383

Review 3.  Diamidophosphate (DAP): A Plausible Prebiotic Phosphorylating Reagent with a Chem to BioChem Potential?

Authors:  Abdulakeem Osumah; Ramanarayanan Krishnamurthy
Journal:  Chembiochem       Date:  2021-08-08       Impact factor: 3.461

  3 in total

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