| Literature DB >> 33107395 |
Eda G Ramirez-Valles1, Alicia Rodríguez-Pulido1, Marcelo Barraza-Salas1, Isaac Martínez-Velis1, Iván Meneses-Morales1, Víctor M Ayala-García1, Carlos A Alba-Fierro1.
Abstract
Traditional techniques for cancer diagnosis, such as nuclear magnetic resonance, ultrasound and tissue analysis, require sophisticated devices and highly trained personnel, which are characterized by elevated operation costs. The use of biomarkers has emerged as an alternative for cancer diagnosis, prognosis and prediction because their measurement in tissues or fluids, such as blood, urine or saliva, is characterized by shorter processing times. However, the biomarkers used currently, and the techniques used for their measurement, including ELISA, western-blot, polymerase chain reaction (PCR) or immunohistochemistry, possess low sensitivity and specificity. Therefore, the search for new proteomic, genomic or immunological biomarkers and the development of new noninvasive, easier and cheaper techniques that meet the sensitivity and specificity criteria for the diagnosis, prognosis and prediction of this disease has become a relevant topic. The purpose of this review is to provide an overview about the search for new cancer biomarkers, including the strategies that must be followed to identify them, as well as presenting the latest advances in the development of biosensors that possess a high potential for cancer diagnosis, prognosis and prediction, mainly focusing on their relevance in lung, prostate and breast cancers.Entities:
Keywords: biomarker; biosensor; cancer diagnosis; genomic; immunologic; prediction; prognosis; proteomic
Year: 2020 PMID: 33107395 PMCID: PMC7607814 DOI: 10.1177/1533033820957033
Source DB: PubMed Journal: Technol Cancer Res Treat ISSN: 1533-0338
Cancer Associated Proteins With Diagnostic Potential.
| Proteomic marker | Cancer type | Clinical use | Detection method | References |
|---|---|---|---|---|
| PRDX6 and ANXA11 | Prostate | Diagnosis | 2D-PAGE | Ummani et al., 2015[ |
| ANX1, HP, AZGP1 and calprotectin | Lung | Diagnosis | 2D-DIGE | Xiao et al., 2012[ |
| SMR | Prostate | Prognosis | Mass spectrometry | Kwon et al., 2020[ |
| APOCH1, CAH1 and NCHL1 | Breast | Diagnosis and prognosis | Mass spectrometry | Kim et al., 2019[ |
| HSP70 | Breast | Prediction | ELISA | Rothammer et al., 2019[ |
| HSP90α | Pan cancer | Diagnosis | ELISA and western blot | Liu et al., 2019[ |
| CLDN2, CLDN6, CLDN11 and CLDN14 | Breast | Prognosis | Western blot | Jia et al., 2019[ |
| Netrin-1 | Breast | Diagnosis | Western blot | El-Gamal et al., 2020[ |
| CRP, prolactin, HGF and autoantigen NY-ESO-1 | Lung | Diagnosis | Multiplexed ELISA | Ma et al., 2016[ |
| AMACR | Prostate | Diagnosis | ELISA | Etheridge et al., 2018[ |
| Urinary plasminogen and fibrinogen gamma | Prostate | Diagnosis | ELISA | Zhang et al., 2020[ |
| HE4 and TTR | Ovarian | Diagnosis | ELISA | Zheng et al., 2018[ |
| ZNF71 | Lung | Prognosis | Immunohistochemistry | Guo et al., 2018[ |
| TTF1, p40, PD-L1 | Lung | Diagnosis and prognosis | Immunohistochemistry | Llie et al., 2018[ |
Analysis of Cancer-Associated Genes Used as Biomarkers and With Potential Use in Biosensors.
| Genomic marker | Cancer type | Clinical use | Detection method | References |
|---|---|---|---|---|
| PD-L1 | Lung | Selection of patients for therapy | NGS-TMB determination | Cyriac and Gandhi, 2018[ |
| STX2 | Lung, colorectal | Exome sequencing, qRT-PCR | Lawrence et al., 2014;[ | |
| ARHGAP35 | Lung, osteosarcoma | Risk associated to rs1052667 polymorphism detection | Exome sequencing, RNA sequencing, SNP Genotyping | Kandoth et al., 2013[ |
| PIP | Breast | qRT-PCR | Gangadharan et al., 2018[ | |
| MSH2 | Hepatocellular carcinoma, lung | Risk associated to rs2303428 | SNP Genotyping | Zhu et al., 2018[ |
| ACYP2 | Breast | Risk associated to rs1682111 and rs10439478 polymorphisms detection | SNP Genotyping | Wu et al., 2018[ |
| NER genes | Esophagus | Prognosis-associated to detection of rs3759497, rs3731054, rs2097215 and rs3916788 polymorphisms | SNP Genotyping | Zhang et al.,2018[ |
| POLK | Prostate, melanoma, lung, large intestine | Risk associated to detection of 9 different polymorphisms | SNP Genotyping and site directed mutagenesis | Antczak et al., 2018[ |
| ERCC1 | Prostate | Cancer aggressiveness associated to detection of rs11615 polymorphism | SNP Genotyping | Henríquez-Hernández et al., 2014[ |
| ATM | Prostate | Cancer aggressiveness associated to detection of rs17503908 polymorphism; risk associated to specific mutation | SNP Genotyping, Genomic data analysis | Henríquez-Hernández et al., 2014[ |
| BRCA1/2 | Prostate | Risk associated to specific mutation | SNP Genotyping | Marshall et al., 2018[ |
| VTCN1 | Breast, lung | Microarray analysis | Akiyama et al., 2016[ | |
| AKT1 | Breast | Risk associated to specific mutation | NGS | Li et al., 2018[ |
| RUNX1 | Breast | Poor prognosis | Tissue microarray/IHC | Ferrari et al., 2014[ |
| miR-21 | Breast | Poor prognosis | Meta-analysis | Adhami et al., 2017[ |
| miR-15b-5p | Lung | Diagnostic | qRT-PCR/ Fluorescence quantum dots liquid bead array | Fan et al., 2015[ |
| miR-30b-5p | Breast | Diagnostic | Microarray/qRT-PCR | Zhang et al., 2017[ |
| SCGB2A2 | Prostate | Risk associated to differentially methylated detection from biological samples | Bisulfite-converted sample DNA assay | Sherlock et al., 2014[ |
| ZNF154 | Prostate | Prognosis | RNAseq/ NGS methylation detection | Zhang et al., 2018[ |
| ADAMTS1 | Pancreas | Early detection | Bisulfite-converted sample DNA assay | Eissa et al., 2019[ |
| CX43 | Lung | Poor prognosis | Tissue microarray/IHC | Aasen et al., 2019[ |
Recent Published Immune Biomarkers With Clinical Use.
| Immune marker | Cancer type | Clinical use | Detection method | References |
|---|---|---|---|---|
| M2 macrophages | Lung adenocarcinoma | Diagnosis and prognosis | Immunohistochemistry | Martínez F 2008[ |
| Neutrophil-to-lymphocyte ratio (NLR) | NSCLC | Prognosis and survival prediction | Blood cell count | Zhang Y 2018[ |
| CCL18 | NSCLC | Prognosis and survival prediction | ELISA | Plönes T 2012[ |
| IL-10 | Breast | Diagnosis | qRT-PCR | Liu C 2018[ |
| CRP | Breast | Diagnosis | ELISA | Kaur R 2019[ |
| TILs and PD-L1 | Breast | Diagnosis | Immunohistochemistry | Gonzalez 2020[ |
| TNF-a308 G/A | Breast | Significant association with breast cancer patients from north India. | PCR-RFLP | Ahmad MM 2020[ |
| MICA-129 Met/Val | Breast | An inherited genetic biomarker contributing to an increased breast cancer risk in Tunisian women. | Genotyped | Ouni N 2020[ |
| TMB status and PD-L1 expression | NSCLC | Prediction response to ICPis | Sequencing | Krieger T 2020[ |
| IFNg | Breast | Cytokine signaling dysregulated | Phosphoflow cytometry | Wang L 2020[ |
| CD163, PD-L1 and CD8 | Breast | Breast cancer classification | Immunohistochemistry | Morgan E 2020[ |
| CD73 | TNBC | Neoadjuvant chemotherapy response | Immunohistochemistry | Cerbelli B 2019[ |
| CCL20 and FOXP3 | Breast | Immune evasion in breast cancer. | Immunohistochemistry | Zhao X 2019[ |
| APOD, CXCL14, IL33 and LIFR | Breast | As biomarkers correlated with breast cancer prognosis | Weighted gene co-expression network analysis (WGCNA), single-sample gene set enrichment analysis (ssGSEA), multivariate COX analysis, least absolute shrinkage, and selection operator (LASSO), and support vector machine-recursive feature elimination (SVM-RFE) algorithm | Li J 2019[ |
| CCL5 | Breast | Prognosis | Cytometric bead-based immunoassay | Fujimoto Y 2020[ |
| CXCL9 and CXCL13 | Breast | Prognosis | qRT-PCR | Razis E 2020[ |
| BTN3A2 | TNBC | Prognosis | Expression in extensive cancers were analyzed with Oncomine and TIMER databases. | Cai P 2020[ |
Figure 1.Biosensors sensitivity timeline from 2001 to date for selected biomarkers, as alfa-fetoprotein (AFP), Autocrine motility factor (AMF), carcinoembryonic antigen (CEA) and Prostate-specific antigen (PSA). Abbreviations used: CNT/Ag NT, silver-nanoparticle enriched carbon nanotube and HRP Horseradish peroxidase.
Figure 2.Electrochemical biosensor. An increase in the electrode resistance owed to the interaction between a biomarker present in body fluids (antigen, complementary DNA strand or ligand) and its target molecule (antibody DNA single strand or receptor) attached to the electrode is measured as a change of current.
Figure 3.Optical biosensor. Owed to the interaction between a biomarker (antigen, complementary DNA strand or ligand) present in body fluids and its target molecule (antibody DNA single strand or receptor) attached to a florescence element, a quencher release occurs which translates in higher fluorescence.
Figure 4.Mass change biosensor. As a result of a change in mass in the piezoelectric device owed to the interaction between a biomarker (antigen, complementary DNA strand or ligand) present in body fluids and its target molecule (antibody DNA single strand or receptor) attached to the piezoelectric device a decay in frequency is recorded.