Literature DB >> 33070100

The blind men and the filament: Understanding structures and functions of microbial nanowires.

Sibel Ebru Yalcin1, Nikhil S Malvankar2.   

Abstract

Extracellular electron transfer via filamentous protein appendages called 'microbial nanowires' has long been studied in Geobacter and other bacteria because of their crucial role in globally-important environmental processes and their applications for bioenergy, biofuels, and bioelectronics. Thousands of papers thought these nanowires as pili without direct evidence. Here, we summarize recent discoveries that could help resolve two decades of confounding observations. Using cryo-electron microscopy with multimodal functional imaging and a suite of electrical, biochemical, and physiological studies, we find that rather than pili, nanowires are composed of cytochromes OmcS and OmcZ that transport electrons via seamless stacking of hemes over micrometers. We discuss the physiological need for two different nanowires and their potential applications for sensing, synthesis, and energy production.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Atomic force microscopy; Biofilms; Conformational change; Cryo-electron microscopy; Cytochromes; Electrochemically-active bacteria; Electron transport; Geobacter; Interspecies electron transfer; Microbial fuel cells; Microbial nanowires; Multimodal imaging; Pili; Protein structure

Year:  2020        PMID: 33070100      PMCID: PMC7736336          DOI: 10.1016/j.cbpa.2020.08.004

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  43 in total

1.  Semiconducting polymers: the Third Generation.

Authors:  Alan J Heeger
Journal:  Chem Soc Rev       Date:  2010-01-21       Impact factor: 54.564

2.  Structural Determination of a Filamentous Chaperone to Fabricate Electronically Conductive Metalloprotein Nanowires.

Authors:  Yun X Chen; Nicole L Ing; Fengbin Wang; Dawei Xu; Nancy B Sloan; Nga T Lam; Daniel L Winter; Edward H Egelman; Allon I Hochbaum; Douglas S Clark; Dominic J Glover
Journal:  ACS Nano       Date:  2020-05-07       Impact factor: 15.881

3.  Power generation from ambient humidity using protein nanowires.

Authors:  Xiaomeng Liu; Hongyan Gao; Joy E Ward; Xiaorong Liu; Bing Yin; Tianda Fu; Jianhan Chen; Derek R Lovley; Jun Yao
Journal:  Nature       Date:  2020-02-17       Impact factor: 49.962

4.  Cytochrome c polymerization by successive domain swapping at the C-terminal helix.

Authors:  Shun Hirota; Yoko Hattori; Satoshi Nagao; Midori Taketa; Hirofumi Komori; Hironari Kamikubo; Zhonghua Wang; Isao Takahashi; Shigeru Negi; Yukio Sugiura; Mikio Kataoka; Yoshiki Higuchi
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-06       Impact factor: 11.205

5.  Structure of Microbial Nanowires Reveals Stacked Hemes that Transport Electrons over Micrometers.

Authors:  Fengbin Wang; Yangqi Gu; J Patrick O'Brien; Sophia M Yi; Sibel Ebru Yalcin; Vishok Srikanth; Cong Shen; Dennis Vu; Nicole L Ing; Allon I Hochbaum; Edward H Egelman; Nikhil S Malvankar
Journal:  Cell       Date:  2019-04-04       Impact factor: 41.582

6.  Structural basis for metallic-like conductivity in microbial nanowires.

Authors:  Nikhil S Malvankar; Madeline Vargas; Kelly Nevin; Pier-Luc Tremblay; Kenneth Evans-Lutterodt; Dmytro Nykypanchuk; Eric Martz; Mark T Tuominen; Derek R Lovley
Journal:  MBio       Date:  2015-03-03       Impact factor: 7.867

7.  Cryo-EM reveals the structural basis of long-range electron transport in a cytochrome-based bacterial nanowire.

Authors:  David J Filman; Stephen F Marino; Joy E Ward; Lu Yang; Zoltán Mester; Esther Bullitt; Derek R Lovley; Mike Strauss
Journal:  Commun Biol       Date:  2019-06-19

8.  Bottom-up structural proteomics: cryoEM of protein complexes enriched from the cellular milieu.

Authors:  Chi-Min Ho; Xiaorun Li; Mason Lai; Thomas C Terwilliger; Josh R Beck; James Wohlschlegel; Daniel E Goldberg; Anthony W P Fitzpatrick; Z Hong Zhou
Journal:  Nat Methods       Date:  2019-11-25       Impact factor: 28.547

9.  Electric field stimulates production of highly conductive microbial OmcZ nanowires.

Authors:  Sibel Ebru Yalcin; J Patrick O'Brien; Yangqi Gu; Krystle Reiss; Sophia M Yi; Ruchi Jain; Vishok Srikanth; Peter J Dahl; Winston Huynh; Dennis Vu; Atanu Acharya; Subhajyoti Chaudhuri; Tamas Varga; Victor S Batista; Nikhil S Malvankar
Journal:  Nat Chem Biol       Date:  2020-08-17       Impact factor: 15.040

10.  Direct observation of anisotropic growth of water films on minerals driven by defects and surface tension.

Authors:  Sibel Ebru Yalcin; Benjamin A Legg; Merve Yeşilbaş; Nikhil S Malvankar; Jean-François Boily
Journal:  Sci Adv       Date:  2020-07-24       Impact factor: 14.136

View more
  11 in total

1.  Cryo-EM structure of an extracellular Geobacter OmcE cytochrome filament reveals tetrahaem packing.

Authors:  Fengbin Wang; Khawla Mustafa; Victor Suciu; Komal Joshi; Chi H Chan; Sol Choi; Zhangli Su; Dong Si; Allon I Hochbaum; Edward H Egelman; Daniel R Bond
Journal:  Nat Microbiol       Date:  2022-07-07       Impact factor: 30.964

2.  Structure of Geobacter pili reveals secretory rather than nanowire behaviour.

Authors:  Yangqi Gu; Vishok Srikanth; Aldo I Salazar-Morales; Ruchi Jain; J Patrick O'Brien; Sophia M Yi; Rajesh Kumar Soni; Fadel A Samatey; Sibel Ebru Yalcin; Nikhil S Malvankar
Journal:  Nature       Date:  2021-09-01       Impact factor: 69.504

Review 3.  Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation.

Authors:  Gerard C L Wong; Jyot D Antani; Pushkar P Lele; Jing Chen; Beiyan Nan; Marco J Kühn; Alexandre Persat; Jean-Louis Bru; Nina Molin Høyland-Kroghsbo; Albert Siryaporn; Jacinta C Conrad; Francesco Carrara; Yutaka Yawata; Roman Stocker; Yves V Brun; Gregory B Whitfield; Calvin K Lee; Jaime de Anda; William C Schmidt; Ramin Golestanian; George A O'Toole; Kyle A Floyd; Fitnat H Yildiz; Shuai Yang; Fan Jin; Masanori Toyofuku; Leo Eberl; Nobuhiko Nomura; Lori A Zacharoff; Mohamed Y El-Naggar; Sibel Ebru Yalcin; Nikhil S Malvankar; Mauricio D Rojas-Andrade; Allon I Hochbaum; Jing Yan; Howard A Stone; Ned S Wingreen; Bonnie L Bassler; Yilin Wu; Haoran Xu; Knut Drescher; Jörn Dunkel
Journal:  Phys Biol       Date:  2021-06-23       Impact factor: 2.959

4.  Protein nanowires with tunable functionality and programmable self-assembly using sequence-controlled synthesis.

Authors:  Nikhil S Malvankar; Farren J Isaacs; Daniel Mark Shapiro; Gunasheil Mandava; Sibel Ebru Yalcin; Pol Arranz-Gibert; Peter J Dahl; Catharine Shipps; Yangqi Gu; Vishok Srikanth; Aldo I Salazar-Morales; J Patrick O'Brien; Koen Vanderschuren; Dennis Vu; Victor S Batista
Journal:  Nat Commun       Date:  2022-02-11       Impact factor: 17.694

5.  Electrochemical Microwell Plate to Study Electroactive Microorganisms in Parallel and Real-Time.

Authors:  Anne Kuchenbuch; Ronny Frank; José Vazquez Ramos; Heinz-Georg Jahnke; Falk Harnisch
Journal:  Front Bioeng Biotechnol       Date:  2022-02-15

6.  Dissecting the Structural and Conductive Functions of Nanowires in Geobacter sulfurreducens Electroactive Biofilms.

Authors:  Yin Ye; Xing Liu; Kenneth H Nealson; Christopher Rensing; Shuping Qin; Shungui Zhou
Journal:  mBio       Date:  2022-02-15       Impact factor: 7.786

Review 7.  Biofilm Biology and Engineering of Geobacter and Shewanella spp. for Energy Applications.

Authors:  Yidan Hu; Yinghui Wang; Xi Han; Yawei Shan; Feng Li; Liang Shi
Journal:  Front Bioeng Biotechnol       Date:  2021-12-03

8.  A 300-fold conductivity increase in microbial cytochrome nanowires due to temperature-induced restructuring of hydrogen bonding networks.

Authors:  Peter J Dahl; Sophia M Yi; Yangqi Gu; Atanu Acharya; Catharine Shipps; Jens Neu; J Patrick O'Brien; Uriel N Morzan; Subhajyoti Chaudhuri; Matthew J Guberman-Pfeffer; Dennis Vu; Sibel Ebru Yalcin; Victor S Batista; Nikhil S Malvankar
Journal:  Sci Adv       Date:  2022-05-11       Impact factor: 14.957

9.  Reply to Lovley, "Untangling Geobacter sulfurreducens Nanowires".

Authors:  Xing Liu; Kenneth H Nealson; Shungui Zhou; Christopher Rensing
Journal:  mBio       Date:  2022-06-01       Impact factor: 7.786

10.  Microbial biofilms as living photoconductors due to ultrafast electron transfer in cytochrome OmcS nanowires.

Authors:  Jens Neu; Catharine C Shipps; Matthew J Guberman-Pfeffer; Cong Shen; Vishok Srikanth; Jacob A Spies; Nathan D Kirchhofer; Sibel Ebru Yalcin; Gary W Brudvig; Victor S Batista; Nikhil S Malvankar
Journal:  Nat Commun       Date:  2022-09-07       Impact factor: 17.694

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.