Literature DB >> 33462162

Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation.

Gerard C L Wong1,2,3, Jyot D Antani4, Pushkar P Lele4, Jing Chen5, Beiyan Nan6, Marco J Kühn7, Alexandre Persat7, Jean-Louis Bru8, Nina Molin Høyland-Kroghsbo9, Albert Siryaporn8,10, Jacinta C Conrad11, Francesco Carrara12, Yutaka Yawata13,14, Roman Stocker12, Yves V Brun15, Gregory B Whitfield15, Calvin K Lee1,2,3, Jaime de Anda1,2,3, William C Schmidt1,2,3, Ramin Golestanian16,17, George A O'Toole18, Kyle A Floyd19, Fitnat H Yildiz19, Shuai Yang20, Fan Jin20, Masanori Toyofuku13,14, Leo Eberl21, Nobuhiko Nomura13,14, Lori A Zacharoff22,23, Mohamed Y El-Naggar22,23,24, Sibel Ebru Yalcin25,26, Nikhil S Malvankar25,26, Mauricio D Rojas-Andrade27, Allon I Hochbaum8,27,28,29, Jing Yan30, Howard A Stone31, Ned S Wingreen32,33, Bonnie L Bassler32,34, Yilin Wu35, Haoran Xu35, Knut Drescher36,37, Jörn Dunkel38.   

Abstract

Bacterial biofilms are communities of bacteria that exist as aggregates that can adhere to surfaces or be free-standing. This complex, social mode of cellular organization is fundamental to the physiology of microbes and often exhibits surprising behavior. Bacterial biofilms are more than the sum of their parts: single-cell behavior has a complex relation to collective community behavior, in a manner perhaps cognate to the complex relation between atomic physics and condensed matter physics. Biofilm microbiology is a relatively young field by biology standards, but it has already attracted intense attention from physicists. Sometimes, this attention takes the form of seeing biofilms as inspiration for new physics. In this roadmap, we highlight the work of those who have taken the opposite strategy: we highlight the work of physicists and physical scientists who use physics to engage fundamental concepts in bacterial biofilm microbiology, including adhesion, sensing, motility, signaling, memory, energy flow, community formation and cooperativity. These contributions are juxtaposed with microbiologists who have made recent important discoveries on bacterial biofilms using state-of-the-art physical methods. The contributions to this roadmap exemplify how well physics and biology can be combined to achieve a new synthesis, rather than just a division of labor. Creative Commons Attribution license.

Entities:  

Keywords:  adhesion; biofilms; cellular organisation; motility; physiology of microbes

Mesh:

Year:  2021        PMID: 33462162      PMCID: PMC8506656          DOI: 10.1088/1478-3975/abdc0e

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.959


  163 in total

1.  Phase separation and rotor self-assembly in active particle suspensions.

Authors:  J Schwarz-Linek; C Valeriani; A Cacciuto; M E Cates; D Marenduzzo; A N Morozov; W C K Poon
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-05       Impact factor: 11.205

2.  Membrane vesicles: an overlooked component of the matrices of biofilms.

Authors:  Sarah R Schooling; Terry J Beveridge
Journal:  J Bacteriol       Date:  2006-08       Impact factor: 3.490

3.  Cell density and mobility protect swarming bacteria against antibiotics.

Authors:  Mitchell T Butler; Qingfeng Wang; Rasika M Harshey
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-02       Impact factor: 11.205

Review 4.  Pseudomonas aeruginosa twitching motility: type IV pili in action.

Authors:  Lori L Burrows
Journal:  Annu Rev Microbiol       Date:  2012-07-02       Impact factor: 15.500

Review 5.  Living in the matrix: assembly and control of Vibrio cholerae biofilms.

Authors:  Jennifer K Teschler; David Zamorano-Sánchez; Andrew S Utada; Christopher J A Warner; Gerard C L Wong; Roger G Linington; Fitnat H Yildiz
Journal:  Nat Rev Microbiol       Date:  2015-05       Impact factor: 60.633

6.  PQS Produced by the Pseudomonas aeruginosa Stress Response Repels Swarms Away from Bacteriophage and Antibiotics.

Authors:  Jean-Louis Bru; Brandon Rawson; Calvin Trinh; Katrine Whiteson; Nina Molin Høyland-Kroghsbo; Albert Siryaporn
Journal:  J Bacteriol       Date:  2019-11-05       Impact factor: 3.490

7.  The small G-protein MglA connects to the MreB actin cytoskeleton at bacterial focal adhesions.

Authors:  Anke Treuner-Lange; Eric Macia; Mathilde Guzzo; Edina Hot; Laura M Faure; Beata Jakobczak; Leon Espinosa; Damien Alcor; Adrien Ducret; Daniela Keilberg; Jean Philippe Castaing; Sandra Lacas Gervais; Michel Franco; Lotte Søgaard-Andersen; Tâm Mignot
Journal:  J Cell Biol       Date:  2015-07-13       Impact factor: 10.539

8.  Psl trails guide exploration and microcolony formation in Pseudomonas aeruginosa biofilms.

Authors:  Kun Zhao; Boo Shan Tseng; Bernard Beckerman; Fan Jin; Maxsim L Gibiansky; Joe J Harrison; Erik Luijten; Matthew R Parsek; Gerard C L Wong
Journal:  Nature       Date:  2013-05-08       Impact factor: 49.962

9.  Establishing rod shape from spherical, peptidoglycan-deficient bacterial spores.

Authors:  Huan Zhang; Garrett A Mulholland; Sofiene Seef; Shiwei Zhu; Jun Liu; Tâm Mignot; Beiyan Nan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-08       Impact factor: 11.205

10.  The type IV pilin PilA couples surface attachment and cell-cycle initiation in Caulobacter crescentus.

Authors:  Luca Del Medico; Dario Cerletti; Philipp Schächle; Matthias Christen; Beat Christen
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-15       Impact factor: 11.205

View more
  7 in total

1.  Pseudomonas aeruginosa distinguishes surfaces by stiffness using retraction of type IV pili.

Authors:  Matthias D Koch; Matthew E Black; Endao Han; Joshua W Shaevitz; Zemer Gitai
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-13       Impact factor: 12.779

2.  The role of organic acid metabolites in geo-energy pipeline corrosion in a sulfate reducing bacteria environment.

Authors:  Makungu Madirisha; Robert Hack; Freek van der Meer
Journal:  Heliyon       Date:  2022-05-20

3.  A 300-fold conductivity increase in microbial cytochrome nanowires due to temperature-induced restructuring of hydrogen bonding networks.

Authors:  Peter J Dahl; Sophia M Yi; Yangqi Gu; Atanu Acharya; Catharine Shipps; Jens Neu; J Patrick O'Brien; Uriel N Morzan; Subhajyoti Chaudhuri; Matthew J Guberman-Pfeffer; Dennis Vu; Sibel Ebru Yalcin; Victor S Batista; Nikhil S Malvankar
Journal:  Sci Adv       Date:  2022-05-11       Impact factor: 14.957

Review 4.  Bacterial Proprioception: Can a Bacterium Sense Its Movement?

Authors:  Rachit Gupta; Junhua Yuan; Pushkar P Lele
Journal:  Front Microbiol       Date:  2022-07-07       Impact factor: 6.064

5.  Flagellar Motility During E. coli Biofilm Formation Provides a Competitive Disadvantage Which Recedes in the Presence of Co-Colonizers.

Authors:  Wafa Benyoussef; Maxime Deforet; Amaury Monmeyran; Nelly Henry
Journal:  Front Cell Infect Microbiol       Date:  2022-07-08       Impact factor: 6.073

6.  Biophysical aspects underlying the swarm to biofilm transition.

Authors:  Vasco M Worlitzer; Ajesh Jose; Ilana Grinberg; Markus Bär; Sebastian Heidenreich; Avigdor Eldar; Gil Ariel; Avraham Be'er
Journal:  Sci Adv       Date:  2022-06-15       Impact factor: 14.957

7.  Microbial biofilms as living photoconductors due to ultrafast electron transfer in cytochrome OmcS nanowires.

Authors:  Jens Neu; Catharine C Shipps; Matthew J Guberman-Pfeffer; Cong Shen; Vishok Srikanth; Jacob A Spies; Nathan D Kirchhofer; Sibel Ebru Yalcin; Gary W Brudvig; Victor S Batista; Nikhil S Malvankar
Journal:  Nat Commun       Date:  2022-09-07       Impact factor: 17.694

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.