Literature DB >> 30951668

Structure of Microbial Nanowires Reveals Stacked Hemes that Transport Electrons over Micrometers.

Fengbin Wang1, Yangqi Gu2, J Patrick O'Brien3, Sophia M Yi3, Sibel Ebru Yalcin3, Vishok Srikanth3, Cong Shen4, Dennis Vu3, Nicole L Ing5, Allon I Hochbaum6, Edward H Egelman7, Nikhil S Malvankar8.   

Abstract

Long-range (>10 μm) transport of electrons along networks of Geobacter sulfurreducens protein filaments, known as microbial nanowires, has been invoked to explain a wide range of globally important redox phenomena. These nanowires were previously thought to be type IV pili composed of PilA protein. Here, we report a 3.7 Å resolution cryoelectron microscopy structure, which surprisingly reveals that, rather than PilA, G. sulfurreducens nanowires are assembled by micrometer-long polymerization of the hexaheme cytochrome OmcS, with hemes packed within ∼3.5-6 Å of each other. The inter-subunit interfaces show unique structural elements such as inter-subunit parallel-stacked hemes and axial coordination of heme by histidines from neighboring subunits. Wild-type OmcS filaments show 100-fold greater conductivity than other filaments from a ΔomcS strain, highlighting the importance of OmcS to conductivity in these nanowires. This structure explains the remarkable capacity of soil bacteria to transport electrons to remote electron acceptors for respiration and energy sharing.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Geobacter; atomic force microscopy; bioelectronics; biomaterials; cryoelectron microscopy; cytochromes; electron conductivity; extracellular electron transport; microbial nanowires; protein structure

Mesh:

Substances:

Year:  2019        PMID: 30951668      PMCID: PMC6720112          DOI: 10.1016/j.cell.2019.03.029

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  50 in total

1.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

2.  Direct exchange of electrons within aggregates of an evolved syntrophic coculture of anaerobic bacteria.

Authors:  Zarath M Summers; Heather E Fogarty; Ching Leang; Ashley E Franks; Nikhil S Malvankar; Derek R Lovley
Journal:  Science       Date:  2010-12-03       Impact factor: 47.728

3.  EMAN2: an extensible image processing suite for electron microscopy.

Authors:  Guang Tang; Liwei Peng; Philip R Baldwin; Deepinder S Mann; Wen Jiang; Ian Rees; Steven J Ludtke
Journal:  J Struct Biol       Date:  2006-06-08       Impact factor: 2.867

Review 4.  Cytochrome c: occurrence and functions.

Authors:  Ivano Bertini; Gabriele Cavallaro; Antonio Rosato
Journal:  Chem Rev       Date:  2006-01       Impact factor: 60.622

5.  MolProbity: More and better reference data for improved all-atom structure validation.

Authors:  Christopher J Williams; Jeffrey J Headd; Nigel W Moriarty; Michael G Prisant; Lizbeth L Videau; Lindsay N Deis; Vishal Verma; Daniel A Keedy; Bradley J Hintze; Vincent B Chen; Swati Jain; Steven M Lewis; W Bryan Arendall; Jack Snoeyink; Paul D Adams; Simon C Lovell; Jane S Richardson; David C Richardson
Journal:  Protein Sci       Date:  2017-11-27       Impact factor: 6.725

6.  Microarray and genetic analysis of electron transfer to electrodes in Geobacter sulfurreducens.

Authors:  Dawn E Holmes; Swades K Chaudhuri; Kelly P Nevin; Teena Mehta; Barbara A Methé; Anna Liu; Joy E Ward; Trevor L Woodard; Jennifer Webster; Derek R Lovley
Journal:  Environ Microbiol       Date:  2006-10       Impact factor: 5.491

7.  Development of a genetic system for Geobacter sulfurreducens.

Authors:  M V Coppi; C Leang; S J Sandler; D R Lovley
Journal:  Appl Environ Microbiol       Date:  2001-07       Impact factor: 4.792

8.  Shewanella secretes flavins that mediate extracellular electron transfer.

Authors:  Enrico Marsili; Daniel B Baron; Indraneel D Shikhare; Dan Coursolle; Jeffrey A Gralnick; Daniel R Bond
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-03       Impact factor: 11.205

9.  A novel Geobacteraceae-specific outer membrane protein J (OmpJ) is essential for electron transport to Fe(III) and Mn(IV) oxides in Geobacter sulfurreducens.

Authors:  Eman Afkar; Gemma Reguera; Marianne Schiffer; Derek R Lovley
Journal:  BMC Microbiol       Date:  2005-07-06       Impact factor: 3.605

10.  Expressing the Geobacter metallireducens PilA in Geobacter sulfurreducens Yields Pili with Exceptional Conductivity.

Authors:  Yang Tan; Ramesh Y Adhikari; Nikhil S Malvankar; Joy E Ward; Trevor L Woodard; Kelly P Nevin; Derek R Lovley
Journal:  MBio       Date:  2017-01-17       Impact factor: 7.867

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  71 in total

1.  On the evolution and physiology of cable bacteria.

Authors:  Kasper U Kjeldsen; Lars Schreiber; Casper A Thorup; Thomas Boesen; Jesper T Bjerg; Tingting Yang; Morten S Dueholm; Steffen Larsen; Nils Risgaard-Petersen; Marta Nierychlo; Markus Schmid; Andreas Bøggild; Jack van de Vossenberg; Jeanine S Geelhoed; Filip J R Meysman; Michael Wagner; Per H Nielsen; Lars Peter Nielsen; Andreas Schramm
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-19       Impact factor: 11.205

2.  Ambidextrous helical nanotubes from self-assembly of designed helical hairpin motifs.

Authors:  Spencer A Hughes; Fengbin Wang; Shengyuan Wang; Mark A B Kreutzberger; Tomasz Osinski; Albina Orlova; Joseph S Wall; Xiaobing Zuo; Edward H Egelman; Vincent P Conticello
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-01       Impact factor: 11.205

Review 3.  The blind men and the filament: Understanding structures and functions of microbial nanowires.

Authors:  Sibel Ebru Yalcin; Nikhil S Malvankar
Journal:  Curr Opin Chem Biol       Date:  2020-10-15       Impact factor: 8.822

Review 4.  Protein Nanowires: the Electrification of the Microbial World and Maybe Our Own.

Authors:  Derek R Lovley; Dawn E Holmes
Journal:  J Bacteriol       Date:  2020-09-23       Impact factor: 3.490

Review 5.  Biology and biotechnology of microbial pilus nanowires.

Authors:  Morgen M Clark; Gemma Reguera
Journal:  J Ind Microbiol Biotechnol       Date:  2020-10-03       Impact factor: 3.346

6.  Structural Determination of a Filamentous Chaperone to Fabricate Electronically Conductive Metalloprotein Nanowires.

Authors:  Yun X Chen; Nicole L Ing; Fengbin Wang; Dawei Xu; Nancy B Sloan; Nga T Lam; Daniel L Winter; Edward H Egelman; Allon I Hochbaum; Douglas S Clark; Dominic J Glover
Journal:  ACS Nano       Date:  2020-05-07       Impact factor: 15.881

7.  Extracellular Electron Transfer: Respiratory or Nutrient Homeostasis?

Authors:  Lars J C Jeuken; Kiel Hards; Yoshio Nakatani
Journal:  J Bacteriol       Date:  2020-03-11       Impact factor: 3.490

8.  Cable bacteria, living electrical conduits in the microbial world.

Authors:  Andreas Teske
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-09       Impact factor: 11.205

9.  Structure of polymerized type V pilin reveals assembly mechanism involving protease-mediated strand exchange.

Authors:  Satoshi Shibata; Mikio Shoji; Kodai Okada; Hideyuki Matsunami; Melissa M Matthews; Katsumi Imada; Koji Nakayama; Matthias Wolf
Journal:  Nat Microbiol       Date:  2020-04-13       Impact factor: 17.745

10.  Extracellular DNA Promotes Efficient Extracellular Electron Transfer by Pyocyanin in Pseudomonas aeruginosa Biofilms.

Authors:  Scott H Saunders; Edmund C M Tse; Matthew D Yates; Fernanda Jiménez Otero; Scott A Trammell; Eric D A Stemp; Jacqueline K Barton; Leonard M Tender; Dianne K Newman
Journal:  Cell       Date:  2020-08-06       Impact factor: 41.582

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