Literature DB >> 33057332

Finding, visualizing, and quantifying latent structure across diverse animal vocal repertoires.

Tim Sainburg1,2, Marvin Thielk3, Timothy Q Gentner1,3,4,5.   

Abstract

Animals produce vocalizations that range in complexity from a single repeated call to hundreds of unique vocal elements patterned in sequences unfolding over hours. Characterizing complex vocalizations can require considerable effort and a deep intuition about each species' vocal behavior. Even with a great deal of experience, human characterizations of animal communication can be affected by human perceptual biases. We present a set of computational methods for projecting animal vocalizations into low dimensional latent representational spaces that are directly learned from the spectrograms of vocal signals. We apply these methods to diverse datasets from over 20 species, including humans, bats, songbirds, mice, cetaceans, and nonhuman primates. Latent projections uncover complex features of data in visually intuitive and quantifiable ways, enabling high-powered comparative analyses of vocal acoustics. We introduce methods for analyzing vocalizations as both discrete sequences and as continuous latent variables. Each method can be used to disentangle complex spectro-temporal structure and observe long-timescale organization in communication.

Entities:  

Year:  2020        PMID: 33057332      PMCID: PMC7591061          DOI: 10.1371/journal.pcbi.1008228

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


  61 in total

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Authors:  P Giudici; T Rydén; P Vandekerkhove
Journal:  Biometrics       Date:  2000-09       Impact factor: 2.571

2.  An ultra-sparse code underlies the generation of neural sequences in a songbird.

Authors:  Richard H R Hahnloser; Alexay A Kozhevnikov; Michale S Fee
Journal:  Nature       Date:  2002-09-05       Impact factor: 49.962

3.  Mapping Sub-Second Structure in Mouse Behavior.

Authors:  Alexander B Wiltschko; Matthew J Johnson; Giuliano Iurilli; Ralph E Peterson; Jesse M Katon; Stan L Pashkovski; Victoria E Abraira; Ryan P Adams; Sandeep Robert Datta
Journal:  Neuron       Date:  2015-12-16       Impact factor: 17.173

4.  Context-dependent categorical perception in a songbird.

Authors:  Robert F Lachlan; Stephen Nowicki
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-05       Impact factor: 11.205

5.  Distributed acoustic cues for caller identity in macaque vocalization.

Authors:  Makoto Fukushima; Alex M Doyle; Matthew P Mullarkey; Mortimer Mishkin; Bruno B Averbeck
Journal:  R Soc Open Sci       Date:  2015-12-23       Impact factor: 2.963

6.  Complexity, Predictability and Time Homogeneity of Syntax in the Songs of Cassin's Vireo (Vireo cassinii).

Authors:  Richard W Hedley
Journal:  PLoS One       Date:  2016-04-06       Impact factor: 3.240

7.  Hidden neural states underlie canary song syntax.

Authors:  Yarden Cohen; Jun Shen; Dawit Semu; Daniel P Leman; William A Liberti; L Nathan Perkins; Derek C Liberti; Darrell N Kotton; Timothy J Gardner
Journal:  Nature       Date:  2020-06-17       Impact factor: 49.962

8.  Automatic large-scale classification of bird sounds is strongly improved by unsupervised feature learning.

Authors:  Dan Stowell; Mark D Plumbley
Journal:  PeerJ       Date:  2014-07-17       Impact factor: 2.984

9.  Automatic Recognition of Element Classes and Boundaries in the Birdsong with Variable Sequences.

Authors:  Takuya Koumura; Kazuo Okanoya
Journal:  PLoS One       Date:  2016-07-21       Impact factor: 3.240

10.  Zebra finches identify individuals using vocal signatures unique to each call type.

Authors:  Julie E Elie; Frédéric E Theunissen
Journal:  Nat Commun       Date:  2018-10-02       Impact factor: 14.919

View more
  10 in total

1.  Neural dynamics underlying birdsong practice and performance.

Authors:  Jonnathan Singh Alvarado; Jack Goffinet; Valerie Michael; William Liberti; Jordan Hatfield; Timothy Gardner; John Pearson; Richard Mooney
Journal:  Nature       Date:  2021-10-20       Impact factor: 69.504

Review 2.  Toward a Computational Neuroethology of Vocal Communication: From Bioacoustics to Neurophysiology, Emerging Tools and Future Directions.

Authors:  Tim Sainburg; Timothy Q Gentner
Journal:  Front Behav Neurosci       Date:  2021-12-20       Impact factor: 3.558

3.  Finding, visualizing, and quantifying latent structure across diverse animal vocal repertoires.

Authors:  Tim Sainburg; Marvin Thielk; Timothy Q Gentner
Journal:  PLoS Comput Biol       Date:  2020-10-15       Impact factor: 4.475

4.  Low-dimensional learned feature spaces quantify individual and group differences in vocal repertoires.

Authors:  Jack Goffinet; Samuel Brudner; Richard Mooney; John Pearson
Journal:  Elife       Date:  2021-05-14       Impact factor: 8.140

5.  Automated annotation of birdsong with a neural network that segments spectrograms.

Authors:  Yarden Cohen; David Aaron Nicholson; Alexa Sanchioni; Emily K Mallaber; Viktoriya Skidanova; Timothy J Gardner
Journal:  Elife       Date:  2022-01-20       Impact factor: 8.713

6.  Deep Learning-Based Cattle Vocal Classification Model and Real-Time Livestock Monitoring System with Noise Filtering.

Authors:  Dae-Hyun Jung; Na Yeon Kim; Sang Ho Moon; Changho Jhin; Hak-Jin Kim; Jung-Seok Yang; Hyoung Seok Kim; Taek Sung Lee; Ju Young Lee; Soo Hyun Park
Journal:  Animals (Basel)       Date:  2021-02-01       Impact factor: 2.752

7.  Measuring context dependency in birdsong using artificial neural networks.

Authors:  Takashi Morita; Hiroki Koda; Kazuo Okanoya; Ryosuke O Tachibana
Journal:  PLoS Comput Biol       Date:  2021-12-28       Impact factor: 4.475

8.  MASCDB, a database of images, descriptors and microphysical properties of individual snowflakes in free fall.

Authors:  Jacopo Grazioli; Gionata Ghiggi; Anne-Claire Billault-Roux; Alexis Berne
Journal:  Sci Data       Date:  2022-05-03       Impact factor: 8.501

9.  Introducing the Software CASE (Cluster and Analyze Sound Events) by Comparing Different Clustering Methods and Audio Transformation Techniques Using Animal Vocalizations.

Authors:  Sebastian Schneider; Kurt Hammerschmidt; Paul Wilhelm Dierkes
Journal:  Animals (Basel)       Date:  2022-08-10       Impact factor: 3.231

10.  Syntactic modulation of rhythm in Australian pied butcherbird song.

Authors:  Jeffrey Xing; Tim Sainburg; Hollis Taylor; Timothy Q Gentner
Journal:  R Soc Open Sci       Date:  2022-09-28       Impact factor: 3.653

  10 in total

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