Literature DB >> 33055207

Horizontal gene transfer potentiates adaptation by reducing selective constraints on the spread of genetic variation.

Laura C Woods1, Rebecca J Gorrell2, Frank Taylor1,2, Tim Connallon1, Terry Kwok3, Michael J McDonald4.   

Abstract

Horizontal gene transfer (HGT) confers the rapid acquisition of novel traits and is pervasive throughout microbial evolution. Despite the central role of HGT, the evolutionary forces that drive the dynamics of HGT alleles in evolving populations are poorly understood. Here, we show that HGT alters the evolutionary dynamics of genetic variation, so that deleterious genetic variants, including antibiotic resistance genes, can establish in populations without selection. We evolve antibiotic-sensitive populations of the human pathogen Helicobacter pylori in an environment without antibiotic but with HGT from an antibiotic-resistant isolate of H. pylori We find that HGT increases the rate of adaptation, with most horizontally transferred genetic variants establishing at a low frequency in the population. When challenged with antibiotic, this low-level variation potentiates adaptation, with HGT populations flourishing in conditions where nonpotentiated populations go extinct. By extending previous models of evolution under HGT, we evaluated the conditions for the establishment and spread of HGT-acquired alleles into recipient populations. We then used our model to estimate parameters of HGT and selection from our experimental evolution data. Together, our findings show how HGT can act as an evolutionary force that facilitates the spread of nonselected genetic variation and expands the adaptive potential of microbial populations.

Entities:  

Keywords:  antibiotic resistance; experimental evolution; horizontal gene transfer

Mesh:

Substances:

Year:  2020        PMID: 33055207      PMCID: PMC7604491          DOI: 10.1073/pnas.2005331117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  41 in total

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Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

Review 2.  Horizontal gene transfer: building the web of life.

Authors:  Shannon M Soucy; Jinling Huang; Johann Peter Gogarten
Journal:  Nat Rev Genet       Date:  2015-08       Impact factor: 53.242

3.  Assessing evolutionary risks of resistance for new antimicrobial therapies.

Authors:  Michael A Brockhurst; Freya Harrison; Jan-Willem Veening; Ellie Harrison; Grace Blackwell; Zamin Iqbal; Craig Maclean
Journal:  Nat Ecol Evol       Date:  2019-04       Impact factor: 15.460

Review 4.  Population genomics of rapid adaptation by soft selective sweeps.

Authors:  Philipp W Messer; Dmitri A Petrov
Journal:  Trends Ecol Evol       Date:  2013-09-25       Impact factor: 17.712

5.  Helicobacter pylori infection and antibiotic resistance: a WHO high priority?

Authors:  Bich N Dang; David Y Graham
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2017-05-03       Impact factor: 46.802

6.  DNA damage triggers genetic exchange in Helicobacter pylori.

Authors:  Marion S Dorer; Jutta Fero; Nina R Salama
Journal:  PLoS Pathog       Date:  2010-07-29       Impact factor: 6.823

7.  Sex speeds adaptation by altering the dynamics of molecular evolution.

Authors:  Michael J McDonald; Daniel P Rice; Michael M Desai
Journal:  Nature       Date:  2016-02-24       Impact factor: 49.962

8.  Evolutionary dynamics of bacteria in the gut microbiome within and across hosts.

Authors:  Nandita R Garud; Benjamin H Good; Oskar Hallatschek; Katherine S Pollard
Journal:  PLoS Biol       Date:  2019-01-23       Impact factor: 8.029

9.  Evidence for soft selective sweeps in the evolution of pneumococcal multidrug resistance and vaccine escape.

Authors:  Nicholas J Croucher; Claire Chewapreecha; William P Hanage; Simon R Harris; Lesley McGee; Mark van der Linden; Jae-Hoon Song; Kwan Soo Ko; Herminia de Lencastre; Claudia Turner; Fan Yang; Raquel Sá-Leão; Bernard Beall; Keith P Klugman; Julian Parkhill; Paul Turner; Stephen D Bentley
Journal:  Genome Biol Evol       Date:  2014-06-10       Impact factor: 3.416

10.  Persistence and reversal of plasmid-mediated antibiotic resistance.

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  11 in total

Review 1.  Horizontal gene transfer and adaptive evolution in bacteria.

Authors:  Brian J Arnold; I-Ting Huang; William P Hanage
Journal:  Nat Rev Microbiol       Date:  2021-11-12       Impact factor: 60.633

2.  HGT is widespread in insects and contributes to male courtship in lepidopterans.

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Journal:  Cell       Date:  2022-07-18       Impact factor: 66.850

3.  Distribution of fitness effects of cross-species transformation reveals potential for fast adaptive evolution.

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4.  Horizontal gene transfer potentiates adaptation by reducing selective constraints on the spread of genetic variation.

Authors:  Laura C Woods; Rebecca J Gorrell; Frank Taylor; Tim Connallon; Terry Kwok; Michael J McDonald
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-14       Impact factor: 11.205

5.  Antimicrobial Resistance Gene Transfer from Campylobacter jejuni in Mono- and Dual-Species Biofilms.

Authors:  Luyao Ma; Michael E Konkel; Xiaonan Lu
Journal:  Appl Environ Microbiol       Date:  2021-07-13       Impact factor: 4.792

6.  Replicative transposition contributes to the evolution and dissemination of KPC-2-producing plasmid in Enterobacterales.

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Journal:  Emerg Microbes Infect       Date:  2022-12       Impact factor: 7.163

7.  Assessing the drug resistance profiles of oral probiotic lozenges.

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Journal:  J Oral Microbiol       Date:  2022-01-07       Impact factor: 5.474

Review 8.  Revisiting Antibiotic Resistance: Mechanistic Foundations to Evolutionary Outlook.

Authors:  Chowdhury M Hasan; Debprasad Dutta; An N T Nguyen
Journal:  Antibiotics (Basel)       Date:  2021-12-30

9.  Phylogenomic disentangling of the Bifidobacterium longum subsp. infantis taxon.

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Journal:  Microb Genom       Date:  2021-07

10.  Genome Mining and Comparative Genome Analysis Revealed Niche-Specific Genome Expansion in Antibacterial Bacillus pumilus Strain SF-4.

Authors:  Sajid Iqbal; John Vollmers; Hussnain Ahmed Janjua
Journal:  Genes (Basel)       Date:  2021-07-12       Impact factor: 4.096

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