Literature DB >> 36224268

Distribution of fitness effects of cross-species transformation reveals potential for fast adaptive evolution.

Isabel Rathmann1, Mona Förster1, Melih Yüksel1, Lucas Horst1, Gabriela Petrungaro1, Tobias Bollenbach1,2, Berenike Maier3,4.   

Abstract

Bacterial transformation, a common mechanism of horizontal gene transfer, can speed up adaptive evolution. How its costs and benefits depend on the growth environment is poorly understood. Here, we characterize the distributions of fitness effects (DFE) of transformation in different conditions and test whether they predict in which condition transformation is beneficial. To determine the DFEs, we generate hybrid libraries between the recipient Bacillus subtilis and different donor species and measure the selection coefficient of each hybrid strain. In complex medium, the donor Bacillus vallismortis confers larger fitness effects than the more closely related donor Bacillus spizizenii. For both donors, the DFEs show strong effect beneficial transfers, indicating potential for fast adaptive evolution. While some transfers of B. vallismortis DNA show pleiotropic effects, various transfers are beneficial only under a single growth condition, indicating that the recipient can benefit from a variety of donor genes to adapt to varying growth conditions. We scrutinize the predictive value of the DFEs by laboratory evolution under different growth conditions and show that the DFEs correctly predict the condition at which transformation confers a benefit. We conclude that transformation has a strong potential for speeding up adaptation to varying environments by profiting from a gene pool shared between closely related species.
© 2022. The Author(s).

Entities:  

Year:  2022        PMID: 36224268     DOI: 10.1038/s41396-022-01325-5

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   11.217


  25 in total

Review 1.  The evolution of sex: empirical insights into the roles of epistasis and drift.

Authors:  J Arjan G M de Visser; Santiago F Elena
Journal:  Nat Rev Genet       Date:  2007-02       Impact factor: 53.242

2.  Natural transformation increases the rate of adaptation in the human pathogen Helicobacter pylori.

Authors:  David A Baltrus; Karen Guillemin; Patrick C Phillips
Journal:  Evolution       Date:  2007-11-01       Impact factor: 3.694

Review 3.  Horizontal gene transfer: building the web of life.

Authors:  Shannon M Soucy; Jinling Huang; Johann Peter Gogarten
Journal:  Nat Rev Genet       Date:  2015-08       Impact factor: 53.242

4.  Growth phase-specific evolutionary benefits of natural transformation in Acinetobacter baylyi.

Authors:  Ane L G Utnes; Vidar Sørum; Nils Hülter; Raul Primicerio; Joachim Hegstad; Julia Kloos; Kaare M Nielsen; Pål J Johnsen
Journal:  ISME J       Date:  2015-04-07       Impact factor: 10.302

Review 5.  Mechanisms of DNA Uptake by Naturally Competent Bacteria.

Authors:  David Dubnau; Melanie Blokesch
Journal:  Annu Rev Genet       Date:  2019-08-21       Impact factor: 16.830

6.  Horizontal gene transfer potentiates adaptation by reducing selective constraints on the spread of genetic variation.

Authors:  Laura C Woods; Rebecca J Gorrell; Frank Taylor; Tim Connallon; Terry Kwok; Michael J McDonald
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-14       Impact factor: 11.205

7.  Experimental Evolution of Bacillus subtilis Reveals the Evolutionary Dynamics of Horizontal Gene Transfer and Suggests Adaptive and Neutral Effects.

Authors:  Shai Slomka; Itamar Françoise; Gil Hornung; Omer Asraf; Tammy Biniashvili; Yitzhak Pilpel; Orna Dahan
Journal:  Genetics       Date:  2020-08-26       Impact factor: 4.562

8.  Competence and Transformation in Bacillus subtilis.

Authors:  Berenike Maier
Journal:  Curr Issues Mol Biol       Date:  2020-01-08       Impact factor: 2.081

9.  Phylogenomic networks reveal limited phylogenetic range of lateral gene transfer by transduction.

Authors:  Ovidiu Popa; Giddy Landan; Tal Dagan
Journal:  ISME J       Date:  2016-09-20       Impact factor: 10.302

10.  Genetic Competence Drives Genome Diversity in Bacillus subtilis.

Authors:  Patrícia H Brito; Bastien Chevreux; Cláudia R Serra; Ghislain Schyns; Adriano O Henriques; José B Pereira-Leal
Journal:  Genome Biol Evol       Date:  2018-01-01       Impact factor: 3.416

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