Literature DB >> 33049498

Recent results in time resolved serial femtosecond crystallography at XFELs.

Allen M Orville1.   

Abstract

Time-resolved serial femtosecond crystallography (tr-SFX) methods exploit slurries of crystalline samples that range in size from hundreds of nanometers to a few tens of micrometers, at near-physiological temperature and pressure, to generate atomic resolution models and probe authentic function with the same experiment. 'Dynamic structural biology' is often used to encompass the research philosophy and techniques. Reaction cycles for tr-SFX studies are initiated by photons or ligand addition/mixing strategies, wherein the latter are potentially generalizable across enzymology. Thus, dynamic structural biology often creates stop-motion molecular movies of macromolecular function. In metal-dependent systems, complementary spectroscopic information can also be collected from the same samples and X-ray pulses, which provides even more detailed mechanistic insights. These types of experimental data also complement quantum mechanical and classical dynamics numerical calculations. Correlated structural-functional results will yield more detailed mechanistic insights and will likely translate into better drugs and treatments impacting human health, and better catalysis for clean energy and agriculture.
Copyright © 2020 Diamond Light Source Ltd. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Year:  2020        PMID: 33049498     DOI: 10.1016/j.sbi.2020.08.011

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  16 in total

1.  Co-flow injection for serial crystallography at X-ray free-electron lasers.

Authors:  Diandra Doppler; Mohammad T Rabbani; Romain Letrun; Jorvani Cruz Villarreal; Dai Hyun Kim; Sahir Gandhi; Ana Egatz-Gomez; Mukul Sonker; Joe Chen; Faisal H M Koua; Jayhow Yang; Mohamed Youssef; Victoria Mazalova; Saša Bajt; Megan L Shelby; Matt A Coleman; Max O Wiedorn; Juraj Knoska; Silvan Schön; Tokushi Sato; Mark S Hunter; Ahmad Hosseinizadeh; Christopher Kuptiz; Reza Nazari; Roberto C Alvarez; Konstantinos Karpos; Sahba Zaare; Zachary Dobson; Erin Discianno; Shangji Zhang; James D Zook; Johan Bielecki; Raphael de Wijn; Adam R Round; Patrik Vagovic; Marco Kloos; Mohammad Vakili; Gihan K Ketawala; Natasha E Stander; Tien L Olson; Katherine Morin; Jyotirmory Mondal; Jonathan Nguyen; José Domingo Meza-Aguilar; Gerdenis Kodis; Sara Vaiana; Jose M Martin-Garcia; Valerio Mariani; Peter Schwander; Marius Schmidt; Marc Messerschmidt; Abbas Ourmazd; Nadia Zatsepin; Uwe Weierstall; Barry D Bruce; Adrian P Mancuso; Thomas Grant; Anton Barty; Henry N Chapman; Matthias Frank; Raimund Fromme; John C H Spence; Sabine Botha; Petra Fromme; Richard A Kirian; Alexandra Ros
Journal:  J Appl Crystallogr       Date:  2022-02-01       Impact factor: 3.304

Review 2.  High throughput and quantitative enzymology in the genomic era.

Authors:  D A Mokhtari; M J Appel; P M Fordyce; D Herschlag
Journal:  Curr Opin Struct Biol       Date:  2021-09-27       Impact factor: 6.809

3.  Room-temperature serial synchrotron crystallography of Drosophila cryptochrome.

Authors:  Connor M Schneps; Abir Ganguly; Brian R Crane
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-07-27       Impact factor: 5.699

Review 4.  Structural Characterization of Multienzyme Assemblies: An Overview.

Authors:  Anastassios C Papageorgiou
Journal:  Methods Mol Biol       Date:  2022

Review 5.  Mapping Enzyme Landscapes by Time-Resolved Crystallography with Synchrotron and X-Ray Free Electron Laser Light.

Authors:  Mark A Wilson
Journal:  Annu Rev Biophys       Date:  2021-12-21       Impact factor: 19.763

6.  Plug-and-play polymer microfluidic chips for hydrated, room temperature, fixed-target serial crystallography.

Authors:  Deepshika Gilbile; Megan L Shelby; Artem Y Lyubimov; Jennifer L Wierman; Diana C F Monteiro; Aina E Cohen; Silvia Russi; Matthew A Coleman; Matthias Frank; Tonya L Kuhl
Journal:  Lab Chip       Date:  2021-12-07       Impact factor: 7.517

7.  An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography.

Authors:  Agata Butryn; Philipp S Simon; Pierre Aller; Philip Hinchliffe; Ramzi N Massad; Gabriel Leen; Catherine L Tooke; Isabel Bogacz; In-Sik Kim; Asmit Bhowmick; Aaron S Brewster; Nicholas E Devenish; Jürgen Brem; Jos J A G Kamps; Pauline A Lang; Patrick Rabe; Danny Axford; John H Beale; Bradley Davy; Ali Ebrahim; Julien Orlans; Selina L S Storm; Tiankun Zhou; Shigeki Owada; Rie Tanaka; Kensuke Tono; Gwyndaf Evans; Robin L Owen; Frances A Houle; Nicholas K Sauter; Christopher J Schofield; James Spencer; Vittal K Yachandra; Junko Yano; Jan F Kern; Allen M Orville
Journal:  Nat Commun       Date:  2021-07-22       Impact factor: 14.919

Review 8.  Best practices for time-resolved serial synchrotron crystallography.

Authors:  Eike C Schulz; Briony A Yorke; Arwen R Pearson; Pedram Mehrabi
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-01-01       Impact factor: 7.652

9.  Fixed-target serial femtosecond crystallography using in cellulo grown microcrystals.

Authors:  J Mia Lahey-Rudolph; Robert Schönherr; Miriam Barthelmess; Pontus Fischer; Carolin Seuring; Armin Wagner; Alke Meents; Lars Redecke
Journal:  IUCrJ       Date:  2021-06-18       Impact factor: 4.769

Review 10.  Aspartate or arginine? Validated redox state X-ray structures elucidate mechanistic subtleties of FeIV = O formation in bacterial dye-decolorizing peroxidases.

Authors:  Marina Lučić; Michael T Wilson; Dimitri A Svistunenko; Robin L Owen; Michael A Hough; Jonathan A R Worrall
Journal:  J Biol Inorg Chem       Date:  2021-09-03       Impact factor: 3.358

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