Literature DB >> 35916222

Room-temperature serial synchrotron crystallography of Drosophila cryptochrome.

Connor M Schneps1, Abir Ganguly2, Brian R Crane1.   

Abstract

Fixed-target serial crystallography allows the high-throughput collection of diffraction data from small crystals at room temperature. This methodology is particularly useful for difficult samples that have sensitivity to radiation damage or intolerance to cryoprotection measures; fixed-target methods also have the added benefit of low sample consumption. Here, this method is applied to the structure determination of the circadian photoreceptor cryptochrome (CRY), previous structures of which have been determined at cryogenic temperature. In determining the structure, several data-filtering strategies were tested for combining observations from the hundreds of crystals that contributed to the final data set. Removing data sets based on the average correlation coefficient among equivalent reflection intensities between a given data set and all others was most effective at improving the data quality and maintaining overall completeness. CRYs are light sensors that undergo conformational photoactivation. Comparisons between the cryogenic and room-temperature CRY structures reveal regions of enhanced mobility at room temperature in loops that have functional importance within the CRY family of proteins. The B factors of the room-temperature structure correlate well with those predicted from molecular-dynamics simulations.

Entities:  

Keywords:  B factors; circadian clock; circadian photoreceptor cryptochrome; correlation filtering; cryptochromes; fixed-target serial synchrotron crystallography; flavin adenine dinucleotide; molecular dynamics; protein crystallography; room temperature

Mesh:

Substances:

Year:  2022        PMID: 35916222      PMCID: PMC9344480          DOI: 10.1107/S2059798322007008

Source DB:  PubMed          Journal:  Acta Crystallogr D Struct Biol        ISSN: 2059-7983            Impact factor:   5.699


  49 in total

Review 1.  The cryptochromes: blue light photoreceptors in plants and animals.

Authors:  Inês Chaves; Richard Pokorny; Martin Byrdin; Nathalie Hoang; Thorsten Ritz; Klaus Brettel; Lars-Oliver Essen; Gijsbertus T J van der Horst; Alfred Batschauer; Margaret Ahmad
Journal:  Annu Rev Plant Biol       Date:  2011       Impact factor: 26.379

2.  XDS.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

3.  Proton uptake mechanism in bacteriorhodopsin captured by serial synchrotron crystallography.

Authors:  Tobias Weinert; Petr Skopintsev; Daniel James; Florian Dworkowski; Ezequiel Panepucci; Demet Kekilli; Antonia Furrer; Steffen Brünle; Sandra Mous; Dmitry Ozerov; Przemyslaw Nogly; Meitian Wang; Jörg Standfuss
Journal:  Science       Date:  2019-07-05       Impact factor: 47.728

Review 4.  Recent results in time resolved serial femtosecond crystallography at XFELs.

Authors:  Allen M Orville
Journal:  Curr Opin Struct Biol       Date:  2020-10-10       Impact factor: 6.809

5.  Changes in active site histidine hydrogen bonding trigger cryptochrome activation.

Authors:  Abir Ganguly; Craig C Manahan; Deniz Top; Estella F Yee; Changfan Lin; Michael W Young; Walter Thiel; Brian R Crane
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-22       Impact factor: 11.205

6.  Structure of full-length Drosophila cryptochrome.

Authors:  Brian D Zoltowski; Anand T Vaidya; Deniz Top; Joanne Widom; Michael W Young; Brian R Crane
Journal:  Nature       Date:  2011-11-13       Impact factor: 49.962

7.  Raster-scanning serial protein crystallography using micro- and nano-focused synchrotron beams.

Authors:  Nicolas Coquelle; Aaron S Brewster; Ulrike Kapp; Anastasya Shilova; Britta Weinhausen; Manfred Burghammer; Jacques Philippe Colletier
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-04-25

8.  Fixed-target protein serial microcrystallography with an x-ray free electron laser.

Authors:  Mark S Hunter; Brent Segelke; Marc Messerschmidt; Garth J Williams; Nadia A Zatsepin; Anton Barty; W Henry Benner; David B Carlson; Matthew Coleman; Alexander Graf; Stefan P Hau-Riege; Tommaso Pardini; M Marvin Seibert; James Evans; Sébastien Boutet; Matthias Frank
Journal:  Sci Rep       Date:  2014-08-12       Impact factor: 4.379

9.  Serial crystallography on in vivo grown microcrystals using synchrotron radiation.

Authors:  Cornelius Gati; Gleb Bourenkov; Marco Klinge; Dirk Rehders; Francesco Stellato; Dominik Oberthür; Oleksandr Yefanov; Benjamin P Sommer; Stefan Mogk; Michael Duszenko; Christian Betzel; Thomas R Schneider; Henry N Chapman; Lars Redecke
Journal:  IUCrJ       Date:  2014-02-10       Impact factor: 4.769

10.  An automated platform for in situ serial crystallography at room temperature.

Authors:  Zhong Ren; Cong Wang; Heewhan Shin; Sepalika Bandara; Indika Kumarapperuma; Michael Y Ren; Weijia Kang; Xiaojing Yang
Journal:  IUCrJ       Date:  2020-09-19       Impact factor: 4.769

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