Literature DB >> 33030141

Prokaryotic Organelles: Bacterial Microcompartments in E. coli and Salmonella.

Katie L Stewart1, Andrew M Stewart1, Thomas A Bobik1.   

Abstract

Bacterial microcompartments (MCPs) are proteinaceous organelles consisting of a metabolic pathway encapsulated within a selectively permeable protein shell. Hundreds of species of bacteria produce MCPs of at least nine different types, and MCP metabolism is associated with enteric pathogenesis, cancer, and heart disease. This review focuses chiefly on the four types of catabolic MCPs (metabolosomes) found in Escherichia coli and Salmonella: the propanediol utilization (pdu), ethanolamine utilization (eut), choline utilization (cut), and glycyl radical propanediol (grp) MCPs. Although the great majority of work done on catabolic MCPs has been carried out with Salmonella and E. coli, research outside the group is mentioned where necessary for a comprehensive understanding. Salient characteristics found across MCPs are discussed, including enzymatic reactions and shell composition, with particular attention paid to key differences between classes of MCPs. We also highlight relevant research on the dynamic processes of MCP assembly, protein targeting, and the mechanisms that underlie selective permeability. Lastly, we discuss emerging biotechnology applications based on MCP principles and point out challenges, unanswered questions, and future directions.

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Year:  2020        PMID: 33030141      PMCID: PMC7552817          DOI: 10.1128/ecosalplus.ESP-0025-2019

Source DB:  PubMed          Journal:  EcoSal Plus        ISSN: 2324-6200


  207 in total

1.  Genetic structure and distribution of four pathogenicity islands (PAI I(536) to PAI IV(536)) of uropathogenic Escherichia coli strain 536.

Authors:  Ulrich Dobrindt; Gabriele Blum-Oehler; Gabor Nagy; György Schneider; André Johann; Gerhard Gottschalk; Jörg Hacker
Journal:  Infect Immun       Date:  2002-11       Impact factor: 3.441

2.  The N-terminal region of the medium subunit (PduD) packages adenosylcobalamin-dependent diol dehydratase (PduCDE) into the Pdu microcompartment.

Authors:  Chenguang Fan; Thomas A Bobik
Journal:  J Bacteriol       Date:  2011-08-05       Impact factor: 3.490

3.  The N Terminus of the PduB Protein Binds the Protein Shell of the Pdu Microcompartment to Its Enzymatic Core.

Authors:  Brent P Lehman; Chiranjit Chowdhury; Thomas A Bobik
Journal:  J Bacteriol       Date:  2017-03-28       Impact factor: 3.490

4.  Structure of a novel 13 nm dodecahedral nanocage assembled from a redesigned bacterial microcompartment shell protein.

Authors:  J Jorda; D J Leibly; M C Thompson; T O Yeates
Journal:  Chem Commun (Camb)       Date:  2016-03-18       Impact factor: 6.222

5.  Ethanolamine utilization in Salmonella typhimurium.

Authors:  D M Roof; J R Roth
Journal:  J Bacteriol       Date:  1988-09       Impact factor: 3.490

6.  Genetic characterization of the pdu operon: use of 1,2-propanediol in Salmonella typhimurium.

Authors:  D Walter; M Ailion; J Roth
Journal:  J Bacteriol       Date:  1997-02       Impact factor: 3.490

7.  Proteomic Analysis of FNR-Regulated Anaerobiosis in Salmonella Typhimurium.

Authors:  Zhen Wang; Jingjing Sun; Mengdan Tian; Zeling Xu; Yanhua Liu; Jiaqi Fu; Aixin Yan; Xiaoyun Liu
Journal:  J Am Soc Mass Spectrom       Date:  2019-03-22       Impact factor: 3.109

8.  The eutT gene of Salmonella enterica Encodes an oxygen-labile, metal-containing ATP:corrinoid adenosyltransferase enzyme.

Authors:  Nicole R Buan; Sang-Jin Suh; Jorge C Escalante-Semerena
Journal:  J Bacteriol       Date:  2004-09       Impact factor: 3.490

9.  Essential roles of nucleotide-switch and metal-coordinating residues for chaperone function of diol dehydratase-reactivase.

Authors:  Koichi Mori; Koji Obayashi; Yasuhiro Hosokawa; Akina Yamamoto; Mayumi Yano; Toshiyuki Yoshinaga; Tetsuo Toraya
Journal:  Biochemistry       Date:  2013-11-14       Impact factor: 3.162

10.  Increased Trimethylamine N-Oxide Portends High Mortality Risk Independent of Glycemic Control in Patients with Type 2 Diabetes Mellitus.

Authors:  W H Wilson Tang; Zeneng Wang; Xinmin S Li; Yiying Fan; Daniel S Li; Yuping Wu; Stanley L Hazen
Journal:  Clin Chem       Date:  2016-11-18       Impact factor: 8.327

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  5 in total

1.  Biogenesis of a bacterial metabolosome for propanediol utilization.

Authors:  Mengru Yang; Nicolas Wenner; Gregory F Dykes; Yan Li; Xiaojun Zhu; Yaqi Sun; Fang Huang; Jay C D Hinton; Lu-Ning Liu
Journal:  Nat Commun       Date:  2022-05-25       Impact factor: 17.694

2.  Vertex protein PduN tunes encapsulated pathway performance by dictating bacterial metabolosome morphology.

Authors:  Carolyn E Mills; Curt Waltmann; Andre G Archer; Nolan W Kennedy; Charlotte H Abrahamson; Alexander D Jackson; Eric W Roth; Sasha Shirman; Michael C Jewett; Niall M Mangan; Monica Olvera de la Cruz; Danielle Tullman-Ercek
Journal:  Nat Commun       Date:  2022-06-29       Impact factor: 17.694

Review 3.  Recent structural insights into bacterial microcompartment shells.

Authors:  Jessica M Ochoa; Todd O Yeates
Journal:  Curr Opin Microbiol       Date:  2021-05-28       Impact factor: 7.584

Review 4.  Introducing noncanonical amino acids for studying and engineering bacterial microcompartments.

Authors:  Hao Chen; Jessica Wilson; Sara Ottinger; Qinglei Gan; Chenguang Fan
Journal:  Curr Opin Microbiol       Date:  2021-04-01       Impact factor: 7.584

5.  Combined Transcriptomic and Proteomic Profiling of E. coli under Microaerobic versus Aerobic Conditions: The Multifaceted Roles of Noncoding Small RNAs and Oxygen-Dependent Sensing in Global Gene Expression Control.

Authors:  Gunn-Guang Liou; Anna Chao Kaberdina; Wei-Syuan Wang; Vladimir R Kaberdin; Sue Lin-Chao
Journal:  Int J Mol Sci       Date:  2022-02-25       Impact factor: 5.923

  5 in total

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