Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 Structure of a novel 13 nm dodecahedral nanocage assembled from a redesigned bacterial microcompartment shell protein.

Literature DB >> 26988700

Structure of a novel 13 nm dodecahedral nanocage assembled from a redesigned bacterial microcompartment shell protein.

J Jorda¹, D J Leibly, M C Thompson, T O Yeates.

Abstract

We report the crystal structure of a novel 60-subunit dodecahedral cage that results from self-assembly of a re-engineered version of a natural protein (PduA) from the Pdu microcompartment shell. Biophysical data illustrate the dependence of assembly on solution conditions, opening up new applications in microcompartment studies and nanotechnology.

Entities: Chemical Disease Species

Mesh：

Substances：
Bacterial Proteins

Year: 2016 PMID： 26988700 PMCID： PMC5081076 DOI： 10.1039/c6cc00851h

Source DB: PubMed Journal: Chem Commun (Camb) ISSN： 1359-7345 Impact factor: 6.222

28 in total

Review 1. Bacterial microcompartments insights into the structure, mechanism, and engineering applications.

Authors: Sophia J Tsai; Todd O Yeates
Journal: Prog Mol Biol Transl Sci Date: 2011 Impact factor: 3.622

2. Structure of a 16-nm cage designed by using protein oligomers.

Authors: Yen-Ting Lai; Duilio Cascio; Todd O Yeates
Journal: Science Date: 2012-06-01 Impact factor: 47.728

3. On the predictability of the orientation of protein domains joined by a spanning alpha-helical linker.

Authors: Yen-Ting Lai; Lin Jiang; Wuyang Chen; Todd O Yeates
Journal: Protein Eng Des Sel Date: 2015-08-04 Impact factor: 1.650

4. Minimalist representations and the importance of nearest neighbor effects in protein folding simulations.

Authors: Andrés Colubri; Abhishek K Jha; Min-Yi Shen; Andrej Sali; R Stephen Berry; Tobin R Sosnick; Karl F Freed
Journal: J Mol Biol Date: 2006-08-18 Impact factor: 5.469

5. Structural insight into the mechanisms of transport across the Salmonella enterica Pdu microcompartment shell.

Authors: Christopher S Crowley; Duilio Cascio; Michael R Sawaya; Jeffery S Kopstein; Thomas A Bobik; Todd O Yeates
Journal: J Biol Chem Date: 2010-09-24 Impact factor: 5.157

Review 6. Structural, evolutionary, and assembly principles of protein oligomerization.

Authors: Emmanuel D Levy; Sarah Teichmann
Journal: Prog Mol Biol Transl Sci Date: 2013 Impact factor: 3.622

7. Comparative Protein Structure Modeling Using MODELLER.

Authors: Benjamin Webb; Andrej Sali
Journal: Curr Protoc Bioinformatics Date: 2014-09-08

Review 8. Diverse bacterial microcompartment organelles.

Authors: Chiranjit Chowdhury; Sharmistha Sinha; Sunny Chun; Todd O Yeates; Thomas A Bobik
Journal: Microbiol Mol Biol Rev Date: 2014-09 Impact factor: 11.056

9. Features and development of Coot.

Authors: P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal: Acta Crystallogr D Biol Crystallogr Date: 2010-03-24

10. Phaser crystallographic software.

Authors: Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal: J Appl Crystallogr Date: 2007-07-13 Impact factor: 3.304

11 in total

Review 1. Prokaryotic Organelles: Bacterial Microcompartments in E. coli and Salmonella.

Authors: Katie L Stewart; Andrew M Stewart; Thomas A Bobik
Journal: EcoSal Plus Date: 2020-10

2. A designed bacterial microcompartment shell with tunable composition and precision cargo loading.

Authors: Bryan Ferlez; Markus Sutter; Cheryl A Kerfeld
Journal: Metab Eng Date: 2019-05-07 Impact factor: 9.783

Review 3. Protein Assembly by Design.

Authors: Jie Zhu; Nicole Avakyan; Albert Kakkis; Alexander M Hoffnagle; Kenneth Han; Yiying Li; Zhiyin Zhang; Tae Su Choi; Youjeong Na; Chung-Jui Yu; F Akif Tezcan
Journal: Chem Rev Date: 2021-08-18 Impact factor: 72.087

Structure of a novel 13 nm dodecahedral nanocage assembled from a redesigned bacterial microcompartment shell protein.

Review 1. Bacterial microcompartments insights into the structure, mechanism, and engineering applications.

2. Structure of a 16-nm cage designed by using protein oligomers.

3. On the predictability of the orientation of protein domains joined by a spanning alpha-helical linker.

4. Minimalist representations and the importance of nearest neighbor effects in protein folding simulations.

5. Structural insight into the mechanisms of transport across the Salmonella enterica Pdu microcompartment shell.

Review 6. Structural, evolutionary, and assembly principles of protein oligomerization.

7. Comparative Protein Structure Modeling Using MODELLER.

Review 8. Diverse bacterial microcompartment organelles.

9. Features and development of Coot.

10. Phaser crystallographic software.

Review 1. Prokaryotic Organelles: Bacterial Microcompartments in E. coli and Salmonella.

2. A designed bacterial microcompartment shell with tunable composition and precision cargo loading.

Review 3. Protein Assembly by Design.

4. Chemical probing provides insight into the native assembly state of a bacterial microcompartment.

Review 5. Advances in the World of Bacterial Microcompartments.

Review 6. Recent structural insights into bacterial microcompartment shells.

7. Engineering the Bacterial Microcompartment Domain for Molecular Scaffolding Applications.

Review 8. Facile methods for heterologous production of bacterial microcompartments in diverse host species.

9. Quantitative characterization of all single amino acid variants of a viral capsid-based drug delivery vehicle.

10. De novo targeting to the cytoplasmic and luminal side of bacterial microcompartments.