Literature DB >> 21821773

The N-terminal region of the medium subunit (PduD) packages adenosylcobalamin-dependent diol dehydratase (PduCDE) into the Pdu microcompartment.

Chenguang Fan1, Thomas A Bobik.   

Abstract

Salmonella enterica produces a proteinaceous microcompartment for B(12)-dependent 1,2-propanediol utilization (Pdu MCP). The Pdu MCP consists of catabolic enzymes encased within a protein shell, and its function is to sequester propionaldehyde, a toxic intermediate of 1,2-propanediol degradation. We report here that a short N-terminal region of the medium subunit (PduD) is required for packaging the coenzyme B(12)-dependent diol dehydratase (PduCDE) into the lumen of the Pdu MCP. Analysis of soluble cell extracts and purified MCPs by Western blotting showed that the PduD subunit mediated packaging of itself and other subunits of diol dehydratase (PduC and PduE) into the Pdu MCP. Deletion of 35 amino acids from the N terminus of PduD significantly impaired the packaging of PduCDE with minimal effects on its enzyme activity. Western blotting showed that fusing the 18 N-terminal amino acids of PduD to green fluorescent protein or glutathione S-transferase resulted in the association of these fusion proteins with the MCP. Immunoprecipitation tests indicated that the fusion proteins were encapsulated inside the MCP shell.

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Year:  2011        PMID: 21821773      PMCID: PMC3187188          DOI: 10.1128/JB.05661-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  46 in total

1.  The propanediol utilization (pdu) operon of Salmonella enterica serovar Typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradation.

Authors:  T A Bobik; G D Havemann; R J Busch; D S Williams; H C Aldrich
Journal:  J Bacteriol       Date:  1999-10       Impact factor: 3.490

2.  Propanediol utilization genes (pdu) of Salmonella typhimurium: three genes for the propanediol dehydratase.

Authors:  T A Bobik; Y Xu; R M Jeter; K E Otto; J R Roth
Journal:  J Bacteriol       Date:  1997-11       Impact factor: 3.490

3.  Mechanism of reactivation of coenzyme B12-dependent diol dehydratase by a molecular chaperone-like reactivating factor.

Authors:  K Mori; T Toraya
Journal:  Biochemistry       Date:  1999-10-05       Impact factor: 3.162

4.  Salmonella typhimurium LT2 catabolizes propionate via the 2-methylcitric acid cycle.

Authors:  A R Horswill; J C Escalante-Semerena
Journal:  J Bacteriol       Date:  1999-09       Impact factor: 3.490

5.  A new mode of B12 binding and the direct participation of a potassium ion in enzyme catalysis: X-ray structure of diol dehydratase.

Authors:  N Shibata; J Masuda; T Tobimatsu; T Toraya; K Suto; Y Morimoto; N Yasuoka
Journal:  Structure       Date:  1999-08-15       Impact factor: 5.006

Review 6.  Biochemistry of coenzyme B12-dependent glycerol and diol dehydratases and organization of the encoding genes.

Authors:  R Daniel; T A Bobik; G Gottschalk
Journal:  FEMS Microbiol Rev       Date:  1998-12       Impact factor: 16.408

7.  Mechanism of action of adenosylcobalamin: glycerol and other substrate analogues as substrates and inactivators for propanediol dehydratase--kinetics, stereospecificity, and mechanism.

Authors:  W W Bachovchin; R G Eagar; K W Moore; J H Richards
Journal:  Biochemistry       Date:  1977-03-22       Impact factor: 3.162

8.  A protein factor is essential for in situ reactivation of glycerol-inactivated adenosylcobalamin-dependent diol dehydratase.

Authors:  K Mori; T Tobimatsu; T Toraya
Journal:  Biosci Biotechnol Biochem       Date:  1997-10       Impact factor: 2.043

9.  Anaerobic metabolism of the L-rhamnose fermentation product 1,2-propanediol in Salmonella typhimurium.

Authors:  N Obradors; J Badía; L Baldomà; J Aguilar
Journal:  J Bacteriol       Date:  1988-05       Impact factor: 3.490

10.  Ethanolamine utilization in Salmonella typhimurium: nucleotide sequence, protein expression, and mutational analysis of the cchA cchB eutE eutJ eutG eutH gene cluster.

Authors:  I Stojiljkovic; A J Bäumler; F Heffron
Journal:  J Bacteriol       Date:  1995-03       Impact factor: 3.490

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  41 in total

1.  De novo design of signal sequences to localize cargo to the 1,2-propanediol utilization microcompartment.

Authors:  Christopher M Jakobson; Marilyn F Slininger Lee; Danielle Tullman-Ercek
Journal:  Protein Sci       Date:  2017-04-17       Impact factor: 6.725

2.  The N Terminus of the PduB Protein Binds the Protein Shell of the Pdu Microcompartment to Its Enzymatic Core.

Authors:  Brent P Lehman; Chiranjit Chowdhury; Thomas A Bobik
Journal:  J Bacteriol       Date:  2017-03-28       Impact factor: 3.490

3.  Using comparative genomics to uncover new kinds of protein-based metabolic organelles in bacteria.

Authors:  Julien Jorda; David Lopez; Nicole M Wheatley; Todd O Yeates
Journal:  Protein Sci       Date:  2013-01-04       Impact factor: 6.725

Review 4.  Diverse bacterial microcompartment organelles.

Authors:  Chiranjit Chowdhury; Sharmistha Sinha; Sunny Chun; Todd O Yeates; Thomas A Bobik
Journal:  Microbiol Mol Biol Rev       Date:  2014-09       Impact factor: 11.056

Review 5.  Building Spatial Synthetic Biology with Compartments, Scaffolds, and Communities.

Authors:  Jessica K Polka; Stephanie G Hays; Pamela A Silver
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-08-01       Impact factor: 10.005

6.  β-Carboxysomal proteins assemble into highly organized structures in Nicotiana chloroplasts.

Authors:  Myat T Lin; Alessandro Occhialini; P John Andralojc; Jean Devonshire; Kevin M Hines; Martin A J Parry; Maureen R Hanson
Journal:  Plant J       Date:  2014-06-09       Impact factor: 6.417

7.  Evidence that a metabolic microcompartment contains and recycles private cofactor pools.

Authors:  Douglas L Huseby; John R Roth
Journal:  J Bacteriol       Date:  2013-04-12       Impact factor: 3.490

8.  Solution structure of a bacterial microcompartment targeting peptide and its application in the construction of an ethanol bioreactor.

Authors:  Andrew D Lawrence; Stefanie Frank; Sarah Newnham; Matthew J Lee; Ian R Brown; Wei-Feng Xue; Michelle L Rowe; Daniel P Mulvihill; Michael B Prentice; Mark J Howard; Martin J Warren
Journal:  ACS Synth Biol       Date:  2014-02-24       Impact factor: 5.110

9.  The function of the PduJ microcompartment shell protein is determined by the genomic position of its encoding gene.

Authors:  Chiranjit Chowdhury; Sunny Chun; Michael R Sawaya; Todd O Yeates; Thomas A Bobik
Journal:  Mol Microbiol       Date:  2016-06-07       Impact factor: 3.501

10.  Localization of proteins to the 1,2-propanediol utilization microcompartment by non-native signal sequences is mediated by a common hydrophobic motif.

Authors:  Christopher M Jakobson; Edward Y Kim; Marilyn F Slininger; Alex Chien; Danielle Tullman-Ercek
Journal:  J Biol Chem       Date:  2015-08-17       Impact factor: 5.157

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