| Literature DB >> 32952408 |
Rhim Ryoo1, Vladimír Antonín2, Kang-Hyeon Ka1.
Abstract
Collections of Gymnopus sect. Levipedes from the Republic of Korea have been studied. Two new species, Gymnopus dryophiloides and G. brunneodiscus , are described based on their macro- and micromorphological and phylogenetic characteristics. Three other species, referred to as Gymnopus spp. 1, 2, and 3, are distinguished as separate taxa without formal descriptions. Taxonomic and phylogenetic positions of all taxa have been inferred and confirmed by analyses of ITS and LSU sequence data. Their detailed descriptions, illustrations and an identification key are provided.Entities:
Keywords: ITS; LSU; Omphalotaceae; molecular systematics; new taxa
Year: 2020 PMID: 32952408 PMCID: PMC7476518 DOI: 10.1080/12298093.2020.1769541
Source DB: PubMed Journal: Mycobiology ISSN: 1229-8093 Impact factor: 1.858
The list on the GenBank accession number of nrITS and nrLSU sequences used for this study.
| Scientific name | Herbarium Number | Locality | GenBank
accession Number | |
|---|---|---|---|---|
| ITS | LSU | |||
| Duke15 | Sweden | DQ480101 | – | |
| Duke14 | U.K., Scotland | DQ480102 | – | |
| TENN 55,834 | U.K., Scotland | DQ480114 | – | |
| CB 16251 | Latvia | JX536168 | – | |
| TENN 57958 | Germany | AY256691 | – | |
| TENN 55,883 | U.K., Scotland | DQ450003 | – | |
| BRNM 710027 | Czech Republic | JX536170 | – | |
| BRNM 670755 | Czech Republic | JX536171 | – | |
| BRNM 695556 | Czech Republic | JX536173 | – | |
| SFSU-AWW118 | Java | AY263432 | – | |
| SFSU-AWW116 | Java | AY263423 | AY639411 | |
| TENN F-059603 | Russia | KP710300 | – | |
| BRNM 734005 | Czech Republic | JX536124 | – | |
| TENN F-059603 | Sweden | – | KP710313 | |
| GLM 45930 | Germany | – | AY207164 | |
| TENN 58257 | Russia | DQ449963 | – | |
| TENN 52412 | USA, ID | DQ449964 | – | |
| TENN 51438 | Canada, NS | DQ449966 | – | |
| Duke29 | DQ480098 | – | ||
| BRNM 695586 | Czech Republic | JX536143 | – | |
| BRNM 712600 | Czech Republic | JX536158 | – | |
| TENN 57012 | – | AY640619 | ||
| ZRL201566 | China | – | KY418871 | |
| FO 21603 | Germany | – | AF291305 | |
| TENN 57012 | – | NG027632 | ||
| BRNM 670686 | Spain | JX536137 | – | |
| DUKE 193411 | Sweden | JX536153 | – | |
| KUC20140627-37 | Korea | KX513744 | – | |
| TENN 59457 | USA, OR | AY256694 | – | |
| SAV XI 2002 | Slovakia | DQ449996 | – | |
| BRNM 705224 | Czech Republic | JX536131 | – | |
| BRNM 664995 | Czech Republic | JX536133 | – | |
| BRNM 693553 | Switzerland | JX536135 | – | |
| GLM 45932 | – | DQ071804 | ||
| BRNM 712422 | Czech Republic | JX536125 | – | |
| BRNM 712407 | Czech Republic | JX536126 | – | |
| BRNM 691489 | Czech Republic | JX536128 | – | |
| Dvořák 138/02, BRNU | Czech Republic | JX536175 | – | |
| Dvořák 393/07, BRNU | Czech Republic | JX536176 | – | |
| BRNM 695773 | Italy | JX536177 | – | |
| AWW125 | AY263424 | AY639419 | ||
| SCM B-4065 | Spain | JN247551 | JN247555 | |
| SCM B-4057 | Spain | JN247552 | JN247556 | |
| SCM B-4058 | Spain | JN247553 | JN247557 | |
| BRNM 737257 | Hungary | – | JN247554 | |
| TENN 59532 | USA, TN | AY256693 | – | |
| TENN 58090 | Costa Rica | AF505788 | – | |
| TENN 56636 | Costa Rica | DQ449978 | – | |
| TENN 58619 | Costa Rica | DQ449979 | – | |
| NY REH8290 | Costa Rica | AF505781 | – | |
| BRNM 728565 | Slovakia | JX536160 | – | |
| BRNM 737693 | Norway | JX536164 | – | |
| BRNM 699795 | Czech Republic | JX536166 | – | |
| AWW117 | Java | AY263448 | – | |
| AWW126 | – | AY639427 | ||
| TENN 56718 | USA, NC | AY256692 | – | |
| TENN 56321 | USA, NC | DQ449972 | – | |
| Duke229 | DQ480093 | – | ||
| TENN 59640 | USA, Tennessee | DQ480113 | – | |
| AWW115 | AY263453 | – | ||
Entries in bold type were newly sequenced by the authors.
Figure 1.Phylogenetic tree for Gymnopus sect. Levipedes based on the nrITS region (ITS1, 5.8S and ITS2) inferred from Bayesian analysis. Specimen names and their GenBank accession numbers in bold letters were newly obtained for this study.
Figure 2.Phylogeny of Gymnopus sect. Levipedes based on the nrLSU (nuclear large subunit of ribosomal RNA gene) inferred from Bayesian analysis. Specimen names and their GenBank accession numbers in bold letters were newly sequenced for this study.
Figure 3.Basidiomata. (A) Gymnopus dryophiloides (holotype, BRNM 781447); (B) G. dryophiloides (BRNM 781452); (C) G. brunneodiscus (holotype: BRNM 808975); (D) Gymnopus sp. 3 (BRNM 718701); (E) Gymnopus sp. 1 (BRNM 808978); (F) Gymnopus sp. 2 (BRNM 718669).
Figure 4.Gymnopus dryophiloides (BRNM 781447). (A) cheilocystidia; (B) basidiospores; (C) pileipellis cells. Scale bar = 20 μm.
Figure 5.Gymnopus brunneodiscus (BRNM 714970). (A) cheilocystidia; (B) basidiospores; (C) pileipellis cells. Scale bar = 20 μm.
Differential macro- and micromorphological characters of G. dryophiloides against similar species.
| Pileus | pale to light yellow or orange or watery ochraceous-yellow | pale colored, orange-brown or ochraceous brown, then ochraceous-brown, yellow-ochraceous to pinkish ochraceous |
| Lamellae | whitish then yellowish white | white, cream to yellow |
| Stipe | 30‒75 × 1.5‒5 mm, concolorous with lamellae at apex, pale to light yellow or orange, sometimes darker, light orange or grayish orange | 30‒120 × 1‒5 mm, yellowish with paler apex, sometimes somewhat darker ochraceous brown in basal part |
| Basidiospores | (4.0)4.5–6.0(6.5) × 2.5–3.5(4.0) μm | 5.0–7.0(8.0) × (2.5)3.0–4.0(4.5) μm |
| Cheilocystidia | 17–38(50) × 4.5–10(17) μm, variable in shape, clavate, (sub)cylindrical, fusoid, mostly lobate, irregular to coralloid | 17–55 × 4.0–10 μm, (sub)cylindrical, narrowly clavate, mostly coralloid, also lobate or with apical projections |
Figure 6.Gymnopus sp. 1 (BRNM 808978). (A) cheilocystidia; (B) basidiospores; (C) pileipellis cells. Scale bar = 20 μm.
Figure 7.Gymnopus sp. 2 (BRNM 718669). (A) cheilocystidia; (B) basidiospores; (C) pileipellis cells. Scale bar = 20 μm.
Differential macro- and micromorphological characters of G. brunneodiscus against similar species.
| Pileus | Light brown to (chestnut) brown, with paler, almost whitish margin | Dark red- or orange-brown, pallescent to reddish yellow or pinkish brownish | Brown to dark brown with beige yellow to white margin in age | Very dark red- to purplish brown, uniform, or only slightly paler at very margin | Brown with beige white margin | Dark brown when young and fresh, fading to an orangish buff |
| Lamellae | Pale yellowish white, sometimes with brownish tinge when young | Whitish or yellowish lamellae | White | White or cream colored | White | Pale orangish yellow, becoming orangish buff |
| Stipe | 35–70 × 1–3 mm, pale brown with orange tinge to orange-brown, with paler, yellowish white apex when young | 20‒60 × 2‒5 mm, yellow to ochraceous or reddish brown | 40‒52 × 1‒2 mm, brownish orange to brown or creamy buff, with orange beige apex | 30‒60 × 2.5‒6 mm, pale yellow at apex, orange-yellow to orange-brown below | 30‒42 × 2‒3 mm, reddish brown, becoming pale orange‒brown, with white beige apex | 22‒40(50) × 1‒2(4) mm, orangish buff when young, becoming yellowish orange (ochraceous orange) at the apex and a tawny brown below with age |
| Basidiospores | (4.7)5.0–7.0 × 2.7–4.0 μm | (5.0)5.5–6.5(7.0) × (2.5)2.75–3.5(4.0) μm | 4.8–6.4 × 2.4–4.4 μm | (6.2)6.5–8.5 × 3.0–4.4 μm | 5.2‒8.0 × 2.4‒3.6 µm | 5.6‒7 × 2.8‒3.5 µm |
| Cheilocystidia | 18–68 × 3.5–6.0(8.0) μm, cylindrical, (narrowly) clavate, irregular, lobed, branched to coralloid, | 16–60 × 6.0–12 μm, clavate, subcylindrical or subutriform, often lobed, branched, coralloid or with apical projections | 20–44 × 3–7 μm, irregularly cylindrical to obtuse clavate, contorted, lobulate | 16.5‒30(44) × 6.0‒11.5 µm, clavate, simple, irregular to coralloid | 17.5‒25.5 × 6.5‒9.5 µm, broadly clavate, lobulate, smooth | usually absent, inconspicuous and rare when present, often collapsed, 24.5‒30 × 2.0‒2.8 µm, narrowly cylindric to flexuous contorted, rarely diverticulate |
Figure 8.Gymnopus sp. 3 (BRNM 718701). (A) cheilocystidia; (B) basidiospores; (C) pileipellis cells. Scale bar = 20 μm.