| Literature DB >> 24761042 |
V Antonín1, P Sedlák2, M Tomšovský2.
Abstract
The systematic integrity of European Gymnopus subsect. Levipedes is verified based on anatomic-morphological characters with support from DNA sequences of ITS and translation elongation factor 1-alpha genes. Seven species (G. alpinus, G. aquosus, G. dryophilus - including var. lanipes, G. erythropus, G. fagiphilus, G. hybridus, and G. ocior) belonging to this subsection are included. We clarify the concepts of G. dryophilus and G. ocior, which were occasionally confused in older literature. Due to unavailability of previously selected neotype of G. dryophilus the substitute neotype specimen is selected. Gymnopus dryophilus var. lanipes is confirmed as a variety; no important differences from nominotypical variability were detected. All discriminative characters used for identification of these species are discussed in detail. An identification key is also provided.Entities:
Keywords: ITS; neotype; nomenclature; translation elongation factor 1-alpha
Year: 2013 PMID: 24761042 PMCID: PMC3904049 DOI: 10.3767/003158513X674043
Source DB: PubMed Journal: Persoonia ISSN: 0031-5850 Impact factor: 11.051
The specimens sequenced by the authors.
| Species | Country | Herbarium | Nr. | ITS | tefa |
|---|---|---|---|---|---|
| Latvia | CB 16251 | G69 | JX536168 | JX536191 | |
| Czech Republic | BRNM 665362 | G3 | JX536172 | JX536192 | |
| Czech Republic | BRNM 695556 | G6 | JX536173 | JX536193 | |
| Czech Republic | BRNM 710027 | G30 | JX536170 | JX536194 | |
| Czech Republic | BRNM 670755 | G36 | JX536171 | ||
| Czech Republic | BRNM 691431 | G37 | JX536174 | ||
| Sweden | DUKE 193432 | G63 | JX536169 | ||
| Czech Republic | BRNM 734005 | G60 | JX536124 | JX536178 | |
| Slovakia | BRA 13021 | G1 | JX536140 | JX536195 | |
| Czech Republic | BRNM 695586 | G4 | JX536143 | JX536196 | |
| Czech Republic | BRNM 691279 | G5 | JX536145 | ||
| Slovenia | BRNM 695317 | G8 | JX536146 | JX536197 | |
| Switzerland | BRNM 693554 | G9 | JX536147 | JX536198 | |
| Slovakia | BRNM 670778 | G10 | JX536141 | JX536199 | |
| Czech Republic | BRNM 704894 | G11 | JX536156 | JX536203 | |
| Italy | BRNM 707149 | G12 | JX536157 | JX536204 | |
| Czech Republic | BRNM 712600 | G31 | JX536158 | JX536206 | |
| Slovakia | BRNM 642393 | G34 | JX536142 | ||
| Czech Republic | BRNM 691282 | G38 | JX536138 | ||
| Czech Republic | BRNM 695739 | G42 | JX536144 | ||
| Czech Republic | BRNM 705601 | G43 | JX536155 | ||
| Czech Republic | BRNM 732938 | G99 | JX536149 | JX536202 | |
| Czech Republic | BRNM 734758 | G98 | JX536148 | JX536201 | |
| Norway | BRNM 737692 | G44 | JX536154 | ||
| Germany | BRNM 737691 | G61 | JX536139 | JX536200 | |
| Sweden | DUKE 193401 | G64 | JX536159 | ||
| Sweden | DUKE 193429 | G65 | JX536150 | ||
| Sweden | DUKE 193405 | G66 | JX536151 | ||
| Sweden | DUKE 193406 | G67 | JX536152 | ||
| Sweden | DUKE 193411 | G68 | JX536153 | ||
| Spain | BRNM 670686 | G13 | JX536137 | JX536205 | |
| Czech Republic | BRNM 714784 | G2 | JX536136 | JX536183 | |
| Czech Republic | BRNM 705224 | G14 | JX536131 | JX536180 | |
| Slovakia | BRNM 706885 | G15 | JX536134 | JX536182 | |
| Switzerland | BRNM 693553 | G18 | JX536135 | JX536181 | |
| Czech Republic | BRNM 666730 | G39 | JX536132 | ||
| Czech Republic | BRNM 664995 | G40 | JX536133 | ||
| Czech Republic | BRNM 707079 | G19 | JX536129 | JX536209 | |
| Czech Republic | BRNM 712422 | G22 | JX536125 | JX536210 | |
| Czech Republic | BRNM 707068 | G23 | JX536130 | JX536211 | |
| Czech Republic | BRNM 712407 | G24 | JX536126 | JX536212 | |
| Czech Republic | BRNM 691489 | G27 | JX536128 | JX536213 | |
| Slovakia | BRNM 695747 | G41 | JX536127 | ||
| Italy | BRNM 695773 | G26 | JX536177 | JX536208 | |
| Czech Republic | Dvořák 393/07, BRNU | G58 | JX536176 | JX536207 | |
| Czech Republic | Dvořák 138/02, BRNU | G59 | JX536175 | ||
| Spain | SCM B-4058 | G57 | JN247553 | ||
| Spain | SCM B-4065 | G55 | JN247551 | ||
| Spain | SCM B-4057 | G56 | JN247552 | ||
| Hungary | BRNM 737257 | G45 | JN247550 | JX536179 | |
| Czech Republic | BRNM 699795 | G29 | JX536166 | JX536188 | |
| Slovakia | BRNM 728565 | G1n | JX536160 | JX536184 | |
| Czech Republic | BRNM 728586 | G2n | JX536165 | JX536185 | |
| Czech Republic | BRNM 728539 | G3n | JX536167 | JX536186 | |
| Czech Republic | BRNM 728540 | G4n | JX536161 | JX536187 | |
| Norway | BRNM 737697 | G46 | JX536162 | JX536189 | |
| Norway | BRNM 737695 | G47 | JX536163 | JX536190 | |
| Norway | BRNM 737693 | G48 | JX536164 |
The statistics of phylogenetic analyses are summarized. In Bayesian analyses, the mean values of two simultaneous runs are presented.
| Dataset/analysis | ITS+tefa / Bayesian analysis (MrBayes) | ITS+tefa / Maximum likelihood (PHYML) | ITS / Bayesian analysis (MrBayes) | ITS / Maximum likelihood (PHYML) |
|---|---|---|---|---|
| Dataset length/bp | 1294 | 1005 | 773 | 531 |
| Variable positions | 336 | 235 | 188 | 121 |
| Singleton positions | 171 | 140 | 109 | 67 |
| Log-likelihood | −4169.583 | −2942.619 | −2581.831 | −1592.603 |
| Gamma shape parameter (alpha in Bayesian analysis) | 0.914 | 0.555 | 0.09735 | 0.693 |
| Proportion of invariant | 0.368 | 0.382 | N/A | N/A |
| f(A) | 0.22600 | 0.23292 | 0.22900 | 0.22748 |
| f(C) | 0.21200 | 0.21714 | 0.17900 | 0.18814 |
| f(G) | 0.22300 | 0.23595 | 0.21400 | 0.21315 |
| f(T) | 0.33900 | 0.31399 | 0.37800 | 0.37123 |
Fig. 1The phylogram inferred from the Bayesian analysis of combined dataset tefa and ITS DNA sequences of Gymnopus spp. included in the study. Numbers at branches indicate Maximum likelihood, Bayesian bootstrap values and Bayesian posterior probabilities values higher than 50 %. The bar indicates the number of expected substitutions per position.
Fig. 2The phylogram inferred from the Bayesian analysis of ITS gene sequences of Gymnopus spp. included in the study. Numbers at branches indicate Maximum likelihood, Bayesian bootstrap values and Bayesian posterior probabilities values higher than 50 %. The bar indicates the number of expected substitutions per position.
Basidiospores size of studied specimens.
| Species | Herbarium | Size of basidiospores (μm) | Size average (μm) | E | Q |
|---|---|---|---|---|---|
| CB 16251 | 6.0–7.5 × 3.0–4.0 | 6.6 × 3.4 | 1.61–2.20 | 1.94 | |
| BRNM 670755 | (5.5−)6.0–7.0 × 3.5–4.5 | 6.3 × 3.9 | 1.43–1.86 | 1.63 | |
| BRNM 695556 | (5.75−)6.0–7.0(−7.5) × (3.25−)3.5–4.0(−4.25) | 6.3 × 3.7 | 1.50–1.89 | 1.69 | |
| BRNM 710027 | (5.5−)6.0–6.75 × 3.0–3.5(−3.75) | 6.2 × 3.3 | 1.57–2.09 | 1.89 | |
| BRNM 665362 | 5.75–6.75 × 3.0–3.75 | 6.3 × 3.3 | 1.71–2.09 | 1.91 | |
| BRNM 691431 | (5.0−)5.0–6.0(−6.5) × 3.0–3.75(−4.0) | 5.8 × 3.4 | 1.50–2.00 | 1.74 | |
| DUKE 193407 | 5.0–6.5 × 3.0–3.5(−4.0) | 5.7 × 3.4 | 1.50–1.86 | 1.69 | |
| DUKE 193408 | 5.5–7.0 × 3.5–4.0 | 6.3 × 3.7 | 1.43–1.91 | 1.70 | |
| DUKE 193409 | 5.5–6.5(−6.75) × 3.5–4.0(−4.25) | 6.2 × 3.8 | 1.43–1.86 | 1.61 | |
| DUKE 193432 | 5.75–7.0 × 3.25–4.25 | 6.3 × 3.7 | 1.55–1.88 | 1.70 | |
| DUKE 193412 | 5.5–6.75(−7.0) × 3.5–4.25 | 6.3 × 3.8 | 1.38–1.77 | 1.64 | |
| DUKE 193410 | 5.5–6.0(−6.25) × 3.5–4.0(−4.25) | 5.7 × 3.7 | 1.36–1.71 | 1.56 | |
| BRNM 670778 | 6.0–7.5 × 3.0–3.75 | 6.8 × 3.3 | 1.86–2.33 | 2.06 | |
| BRNM 695739 | 5.5–6.5(−7.0) × 2.75–3.5 | 6.2 × 3.1 | 1.71–2.25 | 2.03 | |
| BRNM 695586 | (5.75−)6.0–7.0 × (2.75−)3.0–4.0 | 6.4 × 6.2 | 1.71–2.17 | 1.99 | |
| BRNM 691279 | (5.5−)6.0–6.75(−7.0) × (2.5−)2.75–4.0(−4.25) | 6.3 × 3.4 | 1.62–2.20 | 1.86 | |
| BRNM 693554 | 5.5–7.0 × 2.75–3.5(−4.0) | 6,2 × 3,2 | 1.62–2.33 | 1.93 | |
| BRNM 695317 | (5.75−)6.0–8.0 × 3.5–4.5(−5.0) | 7.0 × 4.1 | 1.44–2.03 | 1.73 | |
| BRA 13021 | (5.5−)6.0–7.5 × (3.25−)3.5–4.2 | 6.8 × 3.8 | 1.57–2.03 | 1.79 | |
| BRNM 642393 | 6.0–7.75(−8.0) × 3.0–4.0 | 6.8 × 3.4 | 1.81–2.40 | 2.03 | |
| BRNM 691282 | 6.0–6.75(−7.5) × (2.75−)3.0–3.75 | 6.5 × 3.2 | 1.81–2.22 | 2.00 | |
| BRNM 705601 | (5.0−)5.5–6.5(−6.75) × 3.0–3.5(−4.0) | 6.0 × 3.4 | 1.57–2.03 | 1.77 | |
| BRNM 670686 | (5.0−)5.5–6.0 × 2.75–3.5 | 5.5 × 3.1 | 1.57–2.03 | 1.79 | |
| BRNM 707149 | 5.25–6.0(−6.5) × 3.0–3.75 | 5.7 × 6.6 | 1.57–1.86 | 1.71 | |
| BRNM 734758 | 5.5–6.5(−7.0) × 3.0–3.25 | 6.1 × 3.1 | 1.62–2.17 | 2.00 | |
| BRNM 732938 | 6.0–7.0 × 3.0–4.0 | 6.5 × 3.5 | 1.68–2.17 | 1.86 | |
| BRNM 737692 | (5.0−)5.5–6.25 × 3.25–4.0 | 5.7 × 3.6 | 1.25–1.72 | 1.56 | |
| BRNM 737691 | 5.5–6.5 × 3.5–4.25(−4.5) | 5.9 × 3.8 | 1.33–1.71 | 1.56 | |
| BRNM 704894 | (5.5−)6.5–7.5 × (2.5−)3.0–3.5 | 6.7 × 3.1 | 1.83–2.60 | 2.20 | |
| BRNM 712600 | (5.5−)6.0–7.0 × 3.0–4.0 | 6.3 × 3.4 | 1.62–2.17 | 1.85 | |
| DUKE 193401 | 5.0–5.75(−6.0) × 3.5–4.0 | 5.4 × 3.7 | 1.30–1.63 | 1.47 | |
| DUKE 193403 | 5.0–6.25(−6.5) × (2.75−)3.0–3.75(−4.5) | 5.7 × 3.4 | 1.44–1.88 | 1.68 | |
| DUKE 193405 | (5.0−)5.25–6.0 × (3.0−)3.25–4.0 | 5.7 × 3.5 | 1.43–1.90 | 1.62 | |
| DUKE 193406 | 5.5–6.75(−7.25) × 3.25–4.0 | 6.2 × 3.7 | 1.38–1.86 | 1.69 | |
| DUKE 193411 | 5.0–6.5 × (2.75−)3.25–4.0 | 5.8 × 3.4 | 1.57–1.94 | 1.69 | |
| DUKE 193429 | (5.0−)5.5–6.0 × (2.5−)2.75–3.0 | 5.6 × 3.0 | 1.72–2.00 | 1.86 | |
| BRNM 728565 | 5.25–6.5(−7.0) × 2.75–3.5 | 6.0 × 3.2 | 1.71–2.22 | 1.91 | |
| BRNM 728540 | (5.0−)5.5–6.5 × (2.75−)3.0–3.5(−3.75) | 5.9 × 3.1 | 1.62–2.17 | 1.87 | |
| BRNM 699795 | 5.75–6.5(−7.0) × 3.0–3.5 | 6.3 × 3.3 | 1.71–2.17 | 1.92 | |
| BRNM 737695 | (5.0−)5.5–6.5(−7.0) × 3.25–3.75 | 6.0 × 3.4 | 1.43–2.03 | 1.77 | |
| BRNM 737694 | 5.0–6.0(−6.5) × 2.5–3.5 | 5.5 × 2.9 | 1.67–2.20 | 1.89 | |
| BRNM 737696 | 5.5–6.5(−7.0) × 3.25–4.0(−4.25) | 6.1 × 3.5 | 1.50–2.03 | 1.76 | |
| BRNM 737697 | (5.0−)5.5–6.5 × (3.0−)3.25–3.75 | 5.9 × 3.4 | 1.62–1.94 | 1.74 | |
| BRNM 737693 | 5.25–6.5 × (2.5−)2.75–3.5 | 5.8 × 3.1 | 1.57–2.22 | 1.91 | |
| BRNM 728539 | (5.0−)5.5–6.5 × (2.5−)2.75–3.5 | 5.7 × 3.0 | 1.71–2.17 | 1.92 |
Fig. 3Gymnopus alpinus. Cheilocystidia. — Scale bar = 20 μm.
Fig. 4Gymnopus aquosus. Cheilocystidia. — Scale bar = 20 μm.
Fig. 5Gymnopus dryophilus. Cheilocystidia. — Scale bar = 20 μm.
Fig. 6Gymnopus ocior. Cheilocystidia. — Scale bar = 20 μm.